Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq43180 352 1e-94 seq42595 239 2e-60 >seq43180 Length=4985 Score = 352 bits (390), Expect = 1e-94 Identities = 403/532 (76%), Gaps = 12/532 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| |||||||||| |||| ||| |||||| ||||||| |||||||||||| Sbjct 3696 CGAGTCTGAACAGGGCGTGCTAGTCAGTGGAGGTAGACGCGAAACCTTGTGATCTACCCA 3755 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| ||||||| ||||| || ||||||| ||||||| || |||||||| Sbjct 3756 TGAGCAGGTTGAAGGTTGGGTAAAACCAACTGGAGGACCGAACCAGTAAACGTTGAAAAG 3815 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 || |||||| |||||||||||||||||||| || |||||| |||||||||| || || Sbjct 3816 TTTTTGGATGACTTGTGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTACT 3875 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGT-ATCACCATCGGGGGTAGAGC-ACTGTTA 237 | |||||| |||||| || | | || | | | |||||||| || || Sbjct 3876 CCCCGAAATGCCTTTAGGGGCAGCGTGGGATGATGTCTTACAGAGGTAGAGCTACCAATA 3935 Query 238 TGGCTAGGGGG--TCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 | |||||||| ||| | | ||||||| | | |||||||||||| || || | Sbjct 3936 GGACTAGGGGGAGTCA---CATCCTACCAAATCCTGATGAACTCCGAATGCTGATAAGAT 3992 Query 296 TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | | | | |||||||| | |||||||||||||| | |||||||| ||||| || || Sbjct 3993 TAATC-CTGCAGTGAGGGTAAGGGTGCTAAGGTCCTTATCCGAGAGGGAAAGAACCCAGA 4051 Query 356 CTATCAGCTAAGGCCCCGAAAT-GACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 | | ||||||||| ||| |||| ||| ||||||| |||||| | ||| |||| || Sbjct 4052 CCAACAGCTAAGGTCCCAAAATCTACA-CTAAGTTGAACTAAGGTGGTCCAGTTGCCGAG 4110 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4111 ACAGCCAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTG 4170 Query 475 GTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGC 526 |||||| |||| | ||||||||||||| || |||| ||||||||| Sbjct 4171 GTCGAGCGACAGGGCATCGATAATAATCGGGCATCAAGTGTAGTACCGAAGC 4222 >seq42595 Length=2895 Score = 239 bits (264), Expect = 2e-60 Identities = 353/487 (72%), Gaps = 16/487 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||| || ||| ||||||||||| |||||||||||| Sbjct 2238 CGAGTCTGAATAGGGCGAATGAGTTTAGGGTTGTCGACCCGAAACCGTGTGATCTACCCA 2179 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || ||||| ||||| | |||||||| |||||| |||||||||| ||||| ||||| Sbjct 2178 TGTCCAGGGTGAAGTTCAGGTAACACTGAATGGAGGCCCGAACCCACGCATGTTAAAAAA 2119 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||||||||| ||||||||||||||||| || || | ||| ||| |||||||||||| Sbjct 2118 TGCGGGGATGAGGTGTGGGTAGGGGTGAAATGCCAATCGAACACGGAGATAGCTGGTTCT 2059 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237 | |||||| |||||| ||||| | | | | | || |||||||||||| | Sbjct 2058 CCCCGAAATAGCTTTAGGGCTAGCCTCGGATGAGTGAGACTTGGAGGTAGAGCACTGAT- 2000 Query 238 TGGCTAGGGGGTCATTGC-GACTTACC-AAACCATTGCAAACTCCGAATGCGCATCAGTT 295 || || |||||| | | ||||| | || | |||||||||||||| | || || Sbjct 1999 TGAATAAGGGGTCCCCACAGGATTACCGAGTTCAGT-CAAACTCCGAATGCCAAGCACTT 1941 Query 296 TTACCGCGGGAGT--GAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 | ||||||| || ||| | ||| |||| ||||| ||| ||| || | || Sbjct 1940 ACGTC-CGGGAGTCAGACGGC--GAGTGATAAGATCCGTCGTCGAAAGGGAAACAGCCCA 1884 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 ||| | |||||| ||| || | ||||||| | || || || |||| | Sbjct 1883 GACCGCCGACTAAGGTCCCTAAGTTTGTGCTAAGTGGGA--AAGGATGTGACGTTGCCCA 1826 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||| | |||||||||||| |||||||||| |||||||||||||||||| |||||||| Sbjct 1825 GACAACCAGGATGTTGGCTCAGAAGCAGCCA-CCATTTAAAGAGTGCGTAATAGCTCACT 1767 Query 474 AGTCGAG 480 |||||| Sbjct 1766 GGTCGAG 1760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1687310389248