Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq42595 435 1e-119 seq42138 248 3e-63 seq32227 78.8 3e-12 >seq42595 Length=2895 Score = 435 bits (482), Expect = 1e-119 Identities = 442/567 (78%), Gaps = 14/567 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||||||||||||||||||||||| |||||||| | ||||| || Sbjct 523 TCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTGTGCCTTTACACTCTGCGAATGATTTCC 582 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| ||||||||||||||||||||||||||||| |||| ||||| | |||||||||| Sbjct 583 AACCATTCTGAGGGAACCTTTGGGCGCCTCCGTTACCTTTTAGGAGG-CGACCGCCCCAG 641 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGA-TATCCA 179 | ||||| ||| || | ||||||| || | || ||||| || || ||||||| | || | Sbjct 642 TCAAACTGCCCGCCTGACACTGTCTCCGAACCGGATCACGGCTCAGGGTTAGAATGTCGA 701 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCAC--AACCACTAGCGTGGCCGCATCAT 237 || ||||| | |||| || | | | |||||| |||| ||||| | || || Sbjct 702 -TATCGTCAGGGCAGTATCCCACCGATGCCTCCACCGAACC--TAGCGGTCCGGCTTCCA 758 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 || |||| |||||||| |||||| ||| | |||||| |||||| ||| ||| | Sbjct 759 AGGCTCCTGCCTATCCTGTACAAACGATACCCACATCCAATATCAAGCTGCAGTAAAGCT 818 Query 298 CCC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 || ||||||||| ||||||| |||| | ||| ||||||| || ||||| ||||||| Sbjct 819 CCATGGGGTCTTTCCGTCCTGTCGCGGGTAACCTGCATCTTCACAGGTACTATAATTTCA 878 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 ||||| || | |||||||||| | | ||||||| || ||||||| |||||||||||| Sbjct 879 CCGGGTCTCTCGTTGAGACAGTATCCAAATCGTTACACCTTTCGTGCGGGTCGGAACTTA 938 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 939 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGC 998 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536 ||||||| || || | | | | | | | ||| |||| |||||||||||||| Sbjct 999 TTCAATTCAAAGCTTCTC-CCCGAAGGGATAACCTC-----TCCTTTTAACCTTCCAGCA 1052 Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||| ||||| || ||||| || Sbjct 1053 CCGGGCAGGTGTCAGCCCCTATACATC 1079 >seq42138 Length=1005 Score = 248 bits (274), Expect = 3e-63 Identities = 324/442 (73%), Gaps = 21/442 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCT--GATTG 58 |||||||||| ||||| ||||||||| ||||| ||| || | ||| ||| | | || Sbjct 581 TCGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCTATTGCGCTC--CACGTACGGTTA 638 Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 |||| | ||||||| ||||||| ||||||||||| ||| ||||| | ||| |||| Sbjct 639 CCAATCGTACTGAGGGTACCTTTGAAAGCCTCCGTTACTCTTTTGGAGG-CGACCACCCC 697 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC 178 ||| ||||||||||||| |||||||||| ||| || |||||| ||| Sbjct 698 AGTCAAACTACCCACCACACACTGTCCCC---------CATTGG----GGTTAGGCATCA 744 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 || || | ||||||||| || |||||| | || ||| |||| ||| | Sbjct 745 GATAACCAAAGGGCCGTATTTCAAGGGCGGCTCCACGATGCCTGGCGACACCGCTTCAAA 804 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | |||| ||||||||||||| ||| |||| |||| |||||||||| ||||| Sbjct 805 GCCTCCGGCCTATCCTACACATCAGTTACCCAATGTCAATGTGAAGCTATAGTAAAGGTT 864 Query 299 CC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | ||||||||| ||||| | ||| | || ||||||| || |||| ||||||||| Sbjct 865 CATGGGGTCTTTCCGTCCCGTTGCGGGTAAGCGGCATCTTCACCGCTACTACAATTTCAC 924 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 || || ||| ||||||| | || ||||||| ||||||||||||||||||||||| Sbjct 925 CGAGCTCATGGCCGAGACAGT-GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTA 983 Query 417 CCCGACAAGGAATTTCGCTACC 438 |||||||||||||||||||||| Sbjct 984 CCCGACAAGGAATTTCGCTACC 1005 >seq32227 Length=2728 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 2062 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 2003 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 || |||||||| ||||||||||| | |||| Sbjct 2002 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 1970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1700093043712