Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq39182 618 1e-174 seq41455 378 2e-102 seq43722 282 1e-73 seq106333 248 3e-63 seq7502 154 4e-35 seq125886 136 1e-29 seq17706 134 4e-29 seq32652 113 1e-22 seq4985 113 1e-22 seq3471 77.0 1e-11 >seq39182 Length=5500 Score = 618 bits (684), Expect = 1e-174 Identities = 450/513 (88%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| |||||| |||| |||||||||||||||||| Sbjct 5152 GTACTCATTCCAATTACCAGACTCAAT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 5094 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5093 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5034 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| Sbjct 5033 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 4974 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 4973 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 4914 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | |||||| |||||| ||| |||||| |||||||| || |||| || ||| | Sbjct 4913 CAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCG 4856 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 4855 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 4796 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| |||||| |||||| |||| |||||||| Sbjct 4795 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGGTACCATCAAACAAACTATAACTGA 4737 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 4736 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 4677 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 4676 TAATCTTTGAGACAAGCATATGACTACTGGCAG 4644 >seq41455 Length=627 Score = 378 bits (418), Expect = 2e-102 Identities = 403/519 (78%), Gaps = 31/519 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 ||||||||||||||| | || ||| | || | | |||||||| | ||||||||| Sbjct 512 GTACTCATTCCAATTGCGAGGCCCCGTTCGGGGCTCGCAACAGTATTTTTCGTCACTACC 453 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 452 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 393 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGG 178 ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| | Sbjct 392 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTT-ATAGCCATTG 334 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||||| || ||||| |||||||| ||||| |||||| | ||||| || | |||||| Sbjct 333 TAGGCGTATAACCTACAATCGAAAGCTGATAAGGCAGACACTTGAAAGAGGCGGCGCCGG 274 Query 239 CTC-AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCA-----AGGAGCC---CC 287 | || || |||| | | | |||||||| || ||| || || | | || Sbjct 273 TGCGGAGACCGTGCGCTCAGCTCAAAGTTATTCAGATTCAACACAATGGGGTGACGGACC 214 Query 288 GAAGGGCGTTGGTTTTTTATCTAATAAATACAC----CCCTTCCG----AAGTCGGGGTT 339 || | || | |||| | |||||||| | | ||||| || || || ||| Sbjct 213 GAGGCCCGACCGGTTTTGAACTAATAAAAGCGCTCTTCCCTTGCGGTCAGAGACGTGGT- 155 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT-AGT-AAGGTAC-TATCA 396 |||||||||||||||||||||||||| |||||||| || ||| ||||| ||| Sbjct 154 ----GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGTGTGGGTACAGATCC 99 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||| || ||| ||||||||||||||||||||| ||||| | || | |||| |||| Sbjct 98 AATGAATCATAGCTGATTTAATGAGCCATTCGCGGTTTCGCCTTA-ACTCGGCTTGTACT 40 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 ||||||||||||||||||||||||||||||||||||||| Sbjct 39 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 1 >seq43722 Length=6889846 Score = 282 bits (312), Expect = 1e-73 Identities = 205/236 (87%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 5485997 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 5485938 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5485937 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 5485878 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 5485877 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 5485818 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 || |||||||||||||||||||||||||| || ||||| | |||||| Sbjct 5485817 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 5485762 >seq106333 Length=418 Score = 248 bits (274), Expect = 3e-63 Identities = 300/405 (74%), Gaps = 25/405 (6%) Strand=Plus/Minus Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | Sbjct 418 CAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGACAACCATGGTAGTC 359 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 | ||||||||||||||||||| |||||| ||||||| || | ||||||| | Sbjct 358 GCAGAAACTACCATCGAAAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGTACTT 299 Query 244 GGCCATGCGATTCGTTAA-GTTATTATGAATCACCAAG------GA-----GCCCCGAAG 291 | ||||||||| | || ||||| || ||| ||| || | | ||| | Sbjct 298 GACCATGCGATCTGCAAAAGTTATCCAGATTCATCAAAATTAACGACTTCGGACGCGAGG 239 Query 292 ------GGCGTTGGTTTTTTATCTAATAAATACAC----CCCTTCCGAAGTCGGGGTTTT 341 | || | | |||| |||||||||| ||| ||| || ||| | ||| | Sbjct 238 CCCTCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGAGTTCT 179 Query 342 TA--GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 | |||||||||||||||||||||||||| |||||||| ||| ||| ||| || Sbjct 178 GATTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAG 119 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 ||| | ||||||| || |||||||||||| || || | || | | |||| ||| || Sbjct 118 GAACCAAAACTGATATATTGAGCCATTCGCGGTATCGCCTTA-ATACGGCTTGCACTGAG 60 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 59 ACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 15 >seq7502 Length=874016 Score = 154 bits (170), Expect = 4e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 411527 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTC 411468 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||||| | |||||||||||| |||||||||||||||||||||||||| Sbjct 411467 ACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGA 411413 >seq125886 Length=915 Score = 136 bits (150), Expect = 1e-29 Identities = 97/110 (88%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||||||||||||||||| | | || Sbjct 915 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTA 856 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 855 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 807 >seq17706 Length=950375 Score = 134 bits (148), Expect = 4e-29 Identities = 94/106 (89%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||||| | ||||| ||||| | ||||||||||| Sbjct 375267 ACTCATTCCAATTACAGGGCCTCAAAAGAGTCTTGTATTGTTATTTTTCGTCACTACCTC 375208 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA 107 |||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 375207 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA 375162 >seq32652 Length=300595 Score = 113 bits (124), Expect = 1e-22 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 72345 TAATTTGCACACCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCA 72286 Query 139 GAATCGAACCCTAAT 153 |||||||||||| || Sbjct 72285 GAATCGAACCCTGAT 72271 >seq4985 Length=2040100 Score = 113 bits (124), Expect = 1e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCC 156 || |||||||||||||||||| |||||||||||| | |||||||||| ||| || ||||| Sbjct 93034 CCCTCCTTGGATGTGGTAGCCATTTCTCAGGCTCTCACTCCGGAATCAAACTCTGATTCC 92975 Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 | || |||| | | |||||||||||| ||| |||| |||||||||| |||||| Sbjct 92974 CTGTCACCCATGGTCACCATGGTAGGCATGGTGACTATCATCAAAAGTTGATATGGCAGA 92915 >seq3471 Length=2246630 Score = 77.0 bits (84), Expect = 1e-11 Identities = 113/153 (74%), Gaps = 9/153 (6%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACT-ATCAA 397 ||||||||| || ||||||| |||||| | |||| | | | || || | | | ||| Sbjct 1314202 AGCATGTATCAGGTCTAGAACTACCACAGACATCCCAGAAAGAGAAAAGTGAGTGACCAA 1314143 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATAC 455 | | | ||| ||||||||||||||||| | ||||||| ||| || || || || Sbjct 1314142 AGGATCCATACATGATTTAATGAGCCATTTACCGTTTCACCGTACCAGCCATG--TACAC 1314085 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||| | |||||||||||||||||| ||||||| Sbjct 1314084 TTACATATGCATGGCTTAATCTTTCTGACAAGC 1314052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508353226752