Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9420 223 3e-53 seq19734 111 1e-19 seq43468 95.1 1e-14 seq37045 86.0 5e-12 >seq9420 Length=356144 Score = 223 bits (246), Expect = 3e-53 Identities = 601/902 (67%), Gaps = 33/902 (4%) Strand=Plus/Minus Query 61041 AGAGAATCCTCGT--CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATG 61098 |||||| ||| | || || || | ||||||| |||||| | ||||| |||| ||| Sbjct 53488 AGAGAAAACTCCTGGCGCTTTGTCATCTTCCCCACCGAGTACCATGATATCTGGCAGATG 53429 Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 || || ||||||||||||||||||||||| | |||||||| || ||||||| ||||| Sbjct 53428 TATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGACATT 53369 Query 61159 AATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGT 61216 ||||||| | | | | || || | |||| || ||||| ||| | Sbjct 53368 TGGCACTGGGAATCCCTGAAGCCCAAGGAGAG--AGATTTTATATCCCATGTTCTGGTTT 53311 Query 61217 TCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAG 61275 ||||||| || || || || || ||||| || || |||| || ||| || || || Sbjct 53310 TCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGC-CAAGAA 53252 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || || | || || || ||||||| |||||||| |||||||| ||||| | || Sbjct 53251 GTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATAGAGAACATACAT 53192 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || || ||||| ||| | || || || || ||||| | || | ||| | ||| Sbjct 53191 TCTGAAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAAAGAAAGGGAATTT 53132 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | ||||||||| || ||||| || || ||| ||| || ||||||||||| | Sbjct 53131 CTCCTCAATGCCACTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCAC 53072 Query 61456 TGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | |||| | ||||| | ||||||||| | | | ||||| | | | Sbjct 53071 TGGATTGG--GGACAAAGAAGCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGCGG 53014 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 | || | |||| ||| | ||||| | || || ||| | |||||||| ||||| | Sbjct 53013 AAGGCATCTTTTC---TGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGA 52957 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGAT 61632 |||| || || || || |||||| | || | || | || ||||| | || |||||| Sbjct 52956 TGCCTGGCCTCACATTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTACACTGTGAT 52898 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 |||||| || | ||||||| | ||||| | || |||| || | || | Sbjct 52897 TTTGCTTGCCTGATGTTCAAAC---ACCTGGTACACAAACCACTGGAGTAGAGAGTAAGA 52841 Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 || || || | || || || ||||||||||| || ||||| || ||||| || Sbjct 52840 GAAATAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTGTG 52781 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | || || |||||||| |||||| ||| || ||||| ||||| || ||| | Sbjct 52780 AAGCCTATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGA 52721 Query 61813 CTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTC 61869 | || | || ||||| || ||| || | | | | || | ||||||||||| || Sbjct 52720 C--ATGCTGGAACTGGGTTTG-AGCAAGGTTTTCAGAGTA--GAGAACCCATTTGACTTT 52666 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| | ||||| || | |||||||| || || ||||| | ||| | || ||| Sbjct 52665 ATGGAGAATATTTCACT-----GAAAGACGAACTTCTTTGAGAAGAGAGTAAGGGAGTAT 52611 Query 61930 CA 61931 || Sbjct 52610 CA 52609 >seq19734 Length=6466590 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 5926311 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 5926252 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || ||| Sbjct 5926251 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTTTG 5926192 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 5926191 AGACTCAATGATGGCATACCAAAG 5926168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || || || ||||||| || || || Sbjct 5930538 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCACCATAATAAATAGTTTCAAAG 5930479 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 5930478 ATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 5930419 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| |||||||| Sbjct 5930418 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGACG 5930375 >seq43468 Length=1795776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 1435768 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 1435827 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || || || |||||||||||| | || || || || |||||||| || Sbjct 1435828 GTTCATTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 1435874 >seq37045 Length=3135053 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || || || | |||||||||||||| | | Sbjct 1582752 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 1582693 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 | || |||| ||||| || |||||||| |||||||||||||| | |||||||| Sbjct 1582692 ACATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCGCCGAGGAGGT 1582638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396911395575680