Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 223 3e-53
seq19734 111 1e-19
seq43468 95.1 1e-14
seq37045 86.0 5e-12
>seq9420
Length=356144
Score = 223 bits (246), Expect = 3e-53
Identities = 601/902 (67%), Gaps = 33/902 (4%)
Strand=Plus/Minus
Query 61041 AGAGAATCCTCGT--CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATG 61098
|||||| ||| | || || || | ||||||| |||||| | ||||| |||| |||
Sbjct 53488 AGAGAAAACTCCTGGCGCTTTGTCATCTTCCCCACCGAGTACCATGATATCTGGCAGATG 53429
Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158
|| || ||||||||||||||||||||||| | |||||||| || ||||||| |||||
Sbjct 53428 TATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGACATT 53369
Query 61159 AATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGT 61216
||||||| | | | | || || | |||| || ||||| ||| |
Sbjct 53368 TGGCACTGGGAATCCCTGAAGCCCAAGGAGAG--AGATTTTATATCCCATGTTCTGGTTT 53311
Query 61217 TCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAG 61275
||||||| || || || || || ||||| || || |||| || ||| || || ||
Sbjct 53310 TCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGC-CAAGAA 53252
Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335
|| || || | || || || ||||||| |||||||| |||||||| ||||| | ||
Sbjct 53251 GTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATAGAGAACATACAT 53192
Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395
|| || ||||| ||| | || || || || ||||| | || | ||| | |||
Sbjct 53191 TCTGAAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAAAGAAAGGGAATTT 53132
Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455
| ||||||||| || ||||| || || ||| ||| || ||||||||||| |
Sbjct 53131 CTCCTCAATGCCACTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCAC 53072
Query 61456 TGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513
||||| | |||| | ||||| | ||||||||| | | | ||||| | | |
Sbjct 53071 TGGATTGG--GGACAAAGAAGCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGCGG 53014
Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573
| || | |||| ||| | ||||| | || || ||| | |||||||| ||||| |
Sbjct 53013 AAGGCATCTTTTC---TGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGA 52957
Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGAT 61632
|||| || || || || |||||| | || | || | || ||||| | || ||||||
Sbjct 52956 TGCCTGGCCTCACATTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTACACTGTGAT 52898
Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692
|||||| || | ||||||| | ||||| | || |||| || | || |
Sbjct 52897 TTTGCTTGCCTGATGTTCAAAC---ACCTGGTACACAAACCACTGGAGTAGAGAGTAAGA 52841
Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752
|| || || | || || || ||||||||||| || ||||| || ||||| ||
Sbjct 52840 GAAATAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTGTG 52781
Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812
| || || |||||||| |||||| ||| || ||||| ||||| || ||| |
Sbjct 52780 AAGCCTATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGA 52721
Query 61813 CTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTC 61869
| || | || ||||| || ||| || | | | | || | ||||||||||| ||
Sbjct 52720 C--ATGCTGGAACTGGGTTTG-AGCAAGGTTTTCAGAGTA--GAGAACCCATTTGACTTT 52666
Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929
||||| | ||||| || | |||||||| || || ||||| | ||| | || |||
Sbjct 52665 ATGGAGAATATTTCACT-----GAAAGACGAACTTCTTTGAGAAGAGAGTAAGGGAGTAT 52611
Query 61930 CA 61931
||
Sbjct 52610 CA 52609
>seq19734
Length=6466590
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| ||
Sbjct 5926311 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 5926252
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || |||
Sbjct 5926251 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTTTG 5926192
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 5926191 AGACTCAATGATGGCATACCAAAG 5926168
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749
|||| |||||||||||| | |||||||| || || || || ||||||| || || ||
Sbjct 5930538 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCACCATAATAAATAGTTTCAAAG 5930479
Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809
|| | ||| ||| | || || | ||||| | || | |||||||| ||||
Sbjct 5930478 ATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 5930419
Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853
| || ||||||||||| || ||||| || ||||| ||||||||
Sbjct 5930418 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGACG 5930375
>seq43468
Length=1795776
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || |||||||| ||||| || ||| ||| ||||||
Sbjct 1435768 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 1435827
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| || || |||||||||||| | || || || || |||||||| ||
Sbjct 1435828 GTTCATTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 1435874
>seq37045
Length=3135053
Score = 86.0 bits (94), Expect = 5e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
||||||| || || ||| || || || || || || | |||||||||||||| | |
Sbjct 1582752 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 1582693
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
| || |||| ||||| || |||||||| |||||||||||||| | ||||||||
Sbjct 1582692 ACATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCGCCGAGGAGGT 1582638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396911395575680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |