Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq45 116 2e-23
seq22 105 3e-20
seq27 93.3 2e-16
seq10 87.8 7e-15
seq3 86.0 3e-14
seq180 84.2 9e-14
seq92 84.2 9e-14
seq2 84.2 9e-14
>seq45
Length=17462316
Score = 116 bits (128), Expect = 2e-23
Identities = 99/121 (82%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 7642607 CTGTTAGGACCTGAAAGATGGTGAACTATGCCTGGC-AGGGTGAAGCCAGAGGAAACTCT 7642665
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682
|||||||| | | | || ||| ||||||| | | ||||| | ||| |||||||| |
Sbjct 7642666 GGTGGAGGTCTGTATCAGTCCTGACGTGCAACTGGGTCGTCCGACCTGGCTATAGGGGTG 7642725
Query 683 A 683
|
Sbjct 7642726 A 7642726
>seq22
Length=27210278
Score = 105 bits (116), Expect = 3e-20
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 23209476 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 23209417
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| |||||| || | ||||| ||| ||| |||||| |
Sbjct 23209416 ACCGGCACGAGACCGATAGTCGGCAAGTACCGTAAGGGAAAGCTGAGAAGAACTTTGAAG 23209357
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
|||||||| || || |||||||
Sbjct 23209356 AGAGAGTTCAACAGGGCGTGAAA 23209334
>seq27
Length=24139186
Score = 93.3 bits (102), Expect = 2e-16
Identities = 80/98 (82%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA-ATAGGGTGAA 607
||| | ||||| || |||| ||||||||||||||||||||||| || | || |||||
Sbjct 21969112 GAGCATGAGCACAGGTGTTAGGACCCGAAAGATGGTGAACTATTCCCCAGGCAGAGTGAA 21969171
Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645
||||||||||||| |||||||||| | ||| || |||
Sbjct 21969172 GCCAGAGGAAACTGTGGTGGAGGCCTGTAGCAGTCCTG 21969209
>seq10
Length=44255708
Score = 87.8 bits (96), Expect = 7e-15
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632
|| ||||||||| |||||||||||| | || ||||||||||||||||||||| |||
Sbjct 28208624 CCAAAAGATGGTTAACTATGCCTGAGCAAGGCAAAGCCAGAGGAAACTCTGGTGCAGGTC 28208565
Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680
| | ||| ||| | || |||||| ||| || ||||||||||||
Sbjct 28208564 CATAATGGTCCTGATATTCACATCGATTGTCTGATCTGGGTATAGGGG 28208517
>seq3
Length=58292249
Score = 86.0 bits (94), Expect = 3e-14
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100
||||| |||| ||||||||||||| | || |||| ||||| | | |||| |||||| |
Sbjct 20905021 AGTCGGGTTGCTTGGGAATGCAGCACGAAGTGGGTGGTAAGCTCCAGCTAAGGCTAAACA 20904962
Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160
|| | ||||| || || ||||||| | | ||||| ||||||| |||||| |||
Sbjct 20904961 CTGACAGGAGACTGAAAGTCAACAAGTACCTTAAGGGAAAGCTGAAAAGAACTTTGAAAA 20904902
Query 161 GAGAGTTAAAAA 172
|||| |||||
Sbjct 20904901 GAGACAGAAAAA 20904890
>seq180
Length=3031737
Score = 84.2 bits (92), Expect = 9e-14
Identities = 121/169 (72%), Gaps = 5/169 (3%)
Strand=Plus/Minus
Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAG--GTAAATTTCTTCTA 90
|||| | ||||| |||| ||||||||||||| | | || || || || | | ||||
Sbjct 120835 CTTCTCCCAGTCGGGTTGCTTGGGAATGCAGCCC---AAGGCAGGTGTTAACTCCATCTA 120779
Query 91 AAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGC 150
| |||||||| || ||||| ||||| ||||||| || | ||||| |||||||
Sbjct 120778 AGGCTAAATACCAGCACGAGACGGATAGTCAACAAGTATCGTAAGGGAAAGTTGAAAAGA 120719
Query 151 ACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||| | |||||||| | || |||||| ||| | ||| || ||
Sbjct 120718 ACTTTGAAGAGAGAGTTCACGAGGGCGTGAAGCCGTTAAGAGGTAAACG 120670
>seq92
Length=9144518
Score = 84.2 bits (92), Expect = 9e-14
Identities = 94/123 (76%), Gaps = 7/123 (6%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT-AGGGTGAAGCCAGAGGAAACTCT 622
|||||||||| |||||||||||| ||||||||| | ||||||||||| |||||| |||
Sbjct 905565 TGTTGGGACCTGAAAGATGGTGACCTATGCCTGGGTCAGGGTGAAGCCGGAGGAA--TCT 905622
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT----CGTCAAATTTGGGTATAGG 678
|||||||| | || ||| ||| | || |||| || | || | |||| |||||
Sbjct 905623 AGTGGAGGCCTGTAGTGGTCCTGACATGTGAATCAATTGGACATCCGAACTGGGCATAGG 905682
Query 679 GGC 681
|||
Sbjct 905683 GGC 905685
>seq2
Length=71252344
Score = 84.2 bits (92), Expect = 9e-14
Identities = 101/135 (75%), Gaps = 3/135 (2%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| |||||| |||||||||||| | || |||| |||||| | | |||| |||||||
Sbjct 17235002 GAGTTGAGTTGCTTGGGAATGCAGACCCAAGTGGGGGGTAAACTCCATCTATGGCTAAAT 17234943
Query 100 -ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
| |||| ||||| ||| ||||||| | | ||||| ||||||| | ||||
Sbjct 17234942 AACTGGCACAAGACCAGTAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAATTTTG-- 17234885
Query 159 AAGAGAGTTAAAAAG 173
||||||||| |||||
Sbjct 17234884 AAGAGAGTTCAAAAG 17234870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079942385300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |