Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq45 116 2e-23 seq22 105 3e-20 seq27 93.3 2e-16 seq10 87.8 7e-15 seq3 86.0 3e-14 seq180 84.2 9e-14 seq92 84.2 9e-14 seq2 84.2 9e-14 >seq45 Length=17462316 Score = 116 bits (128), Expect = 2e-23 Identities = 99/121 (82%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 7642607 CTGTTAGGACCTGAAAGATGGTGAACTATGCCTGGC-AGGGTGAAGCCAGAGGAAACTCT 7642665 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||||| | | | || ||| ||||||| | | ||||| | ||| |||||||| | Sbjct 7642666 GGTGGAGGTCTGTATCAGTCCTGACGTGCAACTGGGTCGTCCGACCTGGCTATAGGGGTG 7642725 Query 683 A 683 | Sbjct 7642726 A 7642726 >seq22 Length=27210278 Score = 105 bits (116), Expect = 3e-20 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 23209476 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 23209417 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| |||||| || | ||||| ||| ||| |||||| | Sbjct 23209416 ACCGGCACGAGACCGATAGTCGGCAAGTACCGTAAGGGAAAGCTGAGAAGAACTTTGAAG 23209357 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 23209356 AGAGAGTTCAACAGGGCGTGAAA 23209334 >seq27 Length=24139186 Score = 93.3 bits (102), Expect = 2e-16 Identities = 80/98 (82%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA-ATAGGGTGAA 607 ||| | ||||| || |||| ||||||||||||||||||||||| || | || ||||| Sbjct 21969112 GAGCATGAGCACAGGTGTTAGGACCCGAAAGATGGTGAACTATTCCCCAGGCAGAGTGAA 21969171 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 ||||||||||||| |||||||||| | ||| || ||| Sbjct 21969172 GCCAGAGGAAACTGTGGTGGAGGCCTGTAGCAGTCCTG 21969209 >seq10 Length=44255708 Score = 87.8 bits (96), Expect = 7e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 || ||||||||| |||||||||||| | || ||||||||||||||||||||| ||| Sbjct 28208624 CCAAAAGATGGTTAACTATGCCTGAGCAAGGCAAAGCCAGAGGAAACTCTGGTGCAGGTC 28208565 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 | | ||| ||| | || |||||| ||| || |||||||||||| Sbjct 28208564 CATAATGGTCCTGATATTCACATCGATTGTCTGATCTGGGTATAGGGG 28208517 >seq3 Length=58292249 Score = 86.0 bits (94), Expect = 3e-14 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||| ||||||||||||| | || |||| ||||| | | |||| |||||| | Sbjct 20905021 AGTCGGGTTGCTTGGGAATGCAGCACGAAGTGGGTGGTAAGCTCCAGCTAAGGCTAAACA 20904962 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 || | ||||| || || ||||||| | | ||||| ||||||| |||||| ||| Sbjct 20904961 CTGACAGGAGACTGAAAGTCAACAAGTACCTTAAGGGAAAGCTGAAAAGAACTTTGAAAA 20904902 Query 161 GAGAGTTAAAAA 172 |||| ||||| Sbjct 20904901 GAGACAGAAAAA 20904890 >seq180 Length=3031737 Score = 84.2 bits (92), Expect = 9e-14 Identities = 121/169 (72%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAG--GTAAATTTCTTCTA 90 |||| | ||||| |||| ||||||||||||| | | || || || || | | |||| Sbjct 120835 CTTCTCCCAGTCGGGTTGCTTGGGAATGCAGCCC---AAGGCAGGTGTTAACTCCATCTA 120779 Query 91 AAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGC 150 | |||||||| || ||||| ||||| ||||||| || | ||||| ||||||| Sbjct 120778 AGGCTAAATACCAGCACGAGACGGATAGTCAACAAGTATCGTAAGGGAAAGTTGAAAAGA 120719 Query 151 ACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||| | |||||||| | || |||||| ||| | ||| || || Sbjct 120718 ACTTTGAAGAGAGAGTTCACGAGGGCGTGAAGCCGTTAAGAGGTAAACG 120670 >seq92 Length=9144518 Score = 84.2 bits (92), Expect = 9e-14 Identities = 94/123 (76%), Gaps = 7/123 (6%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT-AGGGTGAAGCCAGAGGAAACTCT 622 |||||||||| |||||||||||| ||||||||| | ||||||||||| |||||| ||| Sbjct 905565 TGTTGGGACCTGAAAGATGGTGACCTATGCCTGGGTCAGGGTGAAGCCGGAGGAA--TCT 905622 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT----CGTCAAATTTGGGTATAGG 678 |||||||| | || ||| ||| | || |||| || | || | |||| ||||| Sbjct 905623 AGTGGAGGCCTGTAGTGGTCCTGACATGTGAATCAATTGGACATCCGAACTGGGCATAGG 905682 Query 679 GGC 681 ||| Sbjct 905683 GGC 905685 >seq2 Length=71252344 Score = 84.2 bits (92), Expect = 9e-14 Identities = 101/135 (75%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| |||||| |||||||||||| | || |||| |||||| | | |||| ||||||| Sbjct 17235002 GAGTTGAGTTGCTTGGGAATGCAGACCCAAGTGGGGGGTAAACTCCATCTATGGCTAAAT 17234943 Query 100 -ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | |||| ||||| ||| ||||||| | | ||||| ||||||| | |||| Sbjct 17234942 AACTGGCACAAGACCAGTAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAATTTTG-- 17234885 Query 159 AAGAGAGTTAAAAAG 173 ||||||||| ||||| Sbjct 17234884 AAGAGAGTTCAAAAG 17234870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079942385300