Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= AAMG01000530.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq146 87.8 2e-15 seq63 86.0 6e-15 seq11 86.0 6e-15 seq103 82.4 8e-14 seq75 82.4 8e-14 seq17 75.2 1e-11 seq43 73.4 4e-11 >seq146 Length=4480930 Score = 87.8 bits (96), Expect = 2e-15 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 8 TCCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGC 67 ||| ||||||| ||||||||||||| | || ||||||||||||||||||||||||| || Sbjct 2782036 TCCTGTGATATTATTCCTAATATCTAGGGGGTGAGAGGATGATATTACTCCCAATATCGC 2781977 Query 68 ACAAATTGTAAA--ACCCTTTCGATATATTTCCTACAATCCA 107 | || |||| | ||| | ||||| |||||| ||||| Sbjct 2781976 AGGAAATGTACACCACCTCTGTGATATTGTTCCTAATATCCA 2781935 Score = 78.8 bits (86), Expect = 1e-12 Identities = 74/92 (80%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 12 GTGATATAGTTCCTAATATCTAAG-TGGGGAGAGGATGATATTACTCCCAATATGGCACA 70 ||||||||||||||| |||||| | ||||| | |||| |||||||||||||||| ||| | Sbjct 2782778 GTGATATAGTTCCTACTATCTAGGGTGGGGGGTGGATAATATTACTCCCAATATCGCAAA 2782719 Query 71 AATTGTAAAA--CCCTTTCGATATATTTCCTA 100 | |||| || ||| | ||||| ||| ||| Sbjct 2782718 TAATGTACAATCCCCCTGTGATATTTTTTCTA 2782687 >seq63 Length=13147851 Score = 86.0 bits (94), Expect = 6e-15 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 14 GATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCACAAAT 73 ||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||| | Sbjct 10009381 GATATTTTTCCTAATATCCAAGTGGGGAGAGGATGATAGTACTCCCAATATCGCAAGGAG 10009322 Query 74 TGTAAAACCCTTTCGATATATTTCCTACAATCCA 107 |||| |||| | |||| ||||||| ||||| Sbjct 10009321 TGTACCCCCCTGT-AATATTTTTCCTAATATCCA 10009289 >seq11 Length=43820709 Score = 86.0 bits (94), Expect = 6e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 ||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 15575482 GTGATATTGTTCCTAATATCCAGGTGAGGAGAGGATGATATTACTCCCAATATGGCA 15575538 >seq103 Length=7998047 Score = 82.4 bits (90), Expect = 8e-14 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 13 TGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCACAAA 72 |||||| |||||||||||| | || |||| |||||||||||||||||||||| ||| ||| Sbjct 3856468 TGATATTGTTCCTAATATCCAGGTAGGGACAGGATGATATTACTCCCAATATTGCAGAAA 3856409 Query 73 TTGTA 77 |||| Sbjct 3856408 GTGTA 3856404 >seq75 Length=10880647 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 |||||||||| |||||||||||| || ||||| |||||||||||||||||||||| ||| Sbjct 9078375 CCCGTGATATTGTTCCTAATATCCAAAGGGGGAAAGGATGATATTACTCCCAATATTGCA 9078316 >seq17 Length=31320352 Score = 75.2 bits (82), Expect = 1e-11 Identities = 76/99 (77%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 || ||||||| |||||||||||| | || |||||| |||||||||||||||| ||| ||| Sbjct 24342677 CCTGTGATATTGTTCCTAATATCCAGGTAGGGAGACGATGATATTACTCCCAGTATTGCA 24342736 Query 69 CAAATTGTAAAACCCTTTCGATATATTTCCTACAATCCA 107 | ||| | || | ||||| |||||| ||||| Sbjct 24342737 GTAGGCGTACACCCACTGTGATATTGTTCCTAATATCCA 24342775 >seq43 Length=17632151 Score = 73.4 bits (80), Expect = 4e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 |||||||||| |||||||||||| | |||||||| ||||||||||||| ||||| ||| Sbjct 13278277 CCCGTGATATTGTTCCTAATATCCAGTGGGGGAGAGAATGATATTACTCCTAATATCGCA 13278336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511986677440