Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq22 141 4e-32 seq2 96.9 2e-18 >seq22 Length=27210278 Score = 141 bits (156), Expect = 4e-32 Identities = 90/98 (92%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 23209688 GGAAAAGAAACTAACCAGGATTCCCTCAGCAAAGGCGAGTGAACGGGGAAGAGCCCAGCG 23209629 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGG 98 ||||||||||||||| ||||| ||| |||| |||||| Sbjct 23209628 CCGAATCCCCGCCCCTCGGTGCGGCTTGGGAAATGTGG 23209591 >seq2 Length=71252344 Score = 96.9 bits (106), Expect = 2e-18 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||||||||||||||||| ||| |||||||| || |||||||| |||| | ||||| || Sbjct 17235220 AAAAGAAACTAACCAGGACTCCATCAGTAACAGCAAGTGAACA-GGAAAACCCCAGTGCT 17235162 Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||| ||||| | || | | || ||| ||||||| || Sbjct 17235161 GAATCCCTGCCCCACAGTAGAGTGCAGGAAATGTGGCATA 17235122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230394198240