Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq146 131 3e-28
seq1932 122 1e-25
seq10 109 9e-22
seq120 93.3 7e-17
seq21 80.6 4e-13
>seq146
Length=4480930
Score = 131 bits (144), Expect = 3e-28
Identities = 102/121 (84%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
|||| |||||| | | ||||| || |||||| ||||||||||||||||||||||||||
Sbjct 37167 GCTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGACAAATCACTCCACC 37226
Query 201 AACTAAGAACGGCCATGCACCA---CCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
||| ||||| ||||||| |||| |||||||| ||||| ||||| | ||||||||||||
Sbjct 37227 AACCAAGAAGGGCCATGTACCACTGCCACCCATGGAATCGAGAAAAAACTATCAATCTGT 37286
Query 258 C 258
|
Sbjct 37287 C 37287
>seq1932
Length=1232
Score = 122 bits (134), Expect = 1e-25
Identities = 100/120 (83%), Gaps = 4/120 (3%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | ||||| || |||||||||||||||||||| || ||||||||
Sbjct 847 CTAGTTAGCATTTCAGAGTCTCATTTATTATCGGAATTAACCAGACACATTGCTCCACCA 906
Query 202 ACTAAGAACGGCCATGCACCACCAC---CCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||
Sbjct 907 ACTAAGAACGGCCATGCACCACCACCAGCCAAGTAATCGAGAAAGAGCTATC-ATCTGTC 965
>seq10
Length=44255708
Score = 109 bits (120), Expect = 9e-22
Identities = 169/236 (72%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 30 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGC 89
|||| |||| ||| ||||| ||||| |||| | |||| ||| |||| || | || |
Sbjct 26598653 GTGCAGCCCTAGACACCTAAGAGCATCTCAGAACCGTTACTGC-TCAATCTGA-AGTGTC 26598710
Query 90 TGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCA-TAGTCGATGGGGCTAT 145
|| | |||| | |||||| |||||| | | ||| ||| | | | ||| | |
Sbjct 26598711 TGAATGCCACTTGTCCCTGTAAGAAATTGAGGGACACTAACGACTTGGGGATTGCAAAAC 26598770
Query 146 ---TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202
|||||| | | |||| |||| ||||| |||||||| || |||||||||| ||||
Sbjct 26598771 ACATTAGCATGCCAGAGTCTTGTTCTTTATCAGAATTAACAAGGCAAATCACTCAGCCAA 26598830
Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| |||||| || |||| |||| |||| ||||||| ||||||||||||
Sbjct 26598831 TTAAGAAGGGCCATTCATCACCTCCCACAGAAGTGAGAAAGACTTATCAATCTGTC 26598886
>seq120
Length=6671958
Score = 93.3 bits (102), Expect = 7e-17
Identities = 150/211 (71%), Gaps = 10/211 (5%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|| ||| |||| | | ||| ||| | ||||||||||| |||||||||||||||||| ||
Sbjct 4152532 GTGAGTATAGCACACATGCAGCCTTGGACATCTAAGGGTATCACAGACCTGTTATTG-CT 4152474
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA------GAAGCCAGCCACCAACC 128
||| ||| |||||||| |||| | ||||||||| | | | | | |
Sbjct 4152473 CAATCTT-GGGTGGCTGGATGCCACTTTTCCCTCTAAAGTTGGGGATGCTGATTGC-TCA 4152416
Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
|||| || | | ||| || | | ||||||| |||| | ||| |||||||| |
Sbjct 4152415 GGGGTCG-TGTAACCAGTTAACATGCCAGAGTCTCGTCTGTTAACCGAAGTAACCAGATA 4152357
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCA 219
||| |||| |||||||||||| |||||||||
Sbjct 4152356 AATTACTCTACCAACTAAGAATGGCCATGCA 4152326
>seq21
Length=27742158
Score = 80.6 bits (88), Expect = 4e-13
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 66
||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 18206263 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGT 18206314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796779266766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |