Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq146 131 3e-28 seq1932 122 1e-25 seq10 109 9e-22 seq120 93.3 7e-17 seq21 80.6 4e-13 >seq146 Length=4480930 Score = 131 bits (144), Expect = 3e-28 Identities = 102/121 (84%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | | ||||| || |||||| |||||||||||||||||||||||||| Sbjct 37167 GCTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGACAAATCACTCCACC 37226 Query 201 AACTAAGAACGGCCATGCACCA---CCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||| ||||| ||||||| |||| |||||||| ||||| ||||| | |||||||||||| Sbjct 37227 AACCAAGAAGGGCCATGTACCACTGCCACCCATGGAATCGAGAAAAAACTATCAATCTGT 37286 Query 258 C 258 | Sbjct 37287 C 37287 >seq1932 Length=1232 Score = 122 bits (134), Expect = 1e-25 Identities = 100/120 (83%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| || |||||||||||||||||||| || |||||||| Sbjct 847 CTAGTTAGCATTTCAGAGTCTCATTTATTATCGGAATTAACCAGACACATTGCTCCACCA 906 Query 202 ACTAAGAACGGCCATGCACCACCAC---CCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||| ||| |||| ||||||||||||| ||||||| Sbjct 907 ACTAAGAACGGCCATGCACCACCACCAGCCAAGTAATCGAGAAAGAGCTATC-ATCTGTC 965 >seq10 Length=44255708 Score = 109 bits (120), Expect = 9e-22 Identities = 169/236 (72%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 30 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGC 89 |||| |||| ||| ||||| ||||| |||| | |||| ||| |||| || | || | Sbjct 26598653 GTGCAGCCCTAGACACCTAAGAGCATCTCAGAACCGTTACTGC-TCAATCTGA-AGTGTC 26598710 Query 90 TGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCA-TAGTCGATGGGGCTAT 145 || | |||| | |||||| |||||| | | ||| ||| | | | ||| | | Sbjct 26598711 TGAATGCCACTTGTCCCTGTAAGAAATTGAGGGACACTAACGACTTGGGGATTGCAAAAC 26598770 Query 146 ---TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||||| | | |||| |||| ||||| |||||||| || |||||||||| |||| Sbjct 26598771 ACATTAGCATGCCAGAGTCTTGTTCTTTATCAGAATTAACAAGGCAAATCACTCAGCCAA 26598830 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||| || |||| |||| |||| ||||||| |||||||||||| Sbjct 26598831 TTAAGAAGGGCCATTCATCACCTCCCACAGAAGTGAGAAAGACTTATCAATCTGTC 26598886 >seq120 Length=6671958 Score = 93.3 bits (102), Expect = 7e-17 Identities = 150/211 (71%), Gaps = 10/211 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || ||| |||| | | ||| ||| | ||||||||||| |||||||||||||||||| || Sbjct 4152532 GTGAGTATAGCACACATGCAGCCTTGGACATCTAAGGGTATCACAGACCTGTTATTG-CT 4152474 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA------GAAGCCAGCCACCAACC 128 ||| ||| |||||||| |||| | ||||||||| | | | | | | Sbjct 4152473 CAATCTT-GGGTGGCTGGATGCCACTTTTCCCTCTAAAGTTGGGGATGCTGATTGC-TCA 4152416 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 |||| || | | ||| || | | ||||||| |||| | ||| |||||||| | Sbjct 4152415 GGGGTCG-TGTAACCAGTTAACATGCCAGAGTCTCGTCTGTTAACCGAAGTAACCAGATA 4152357 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCA 219 ||| |||| |||||||||||| ||||||||| Sbjct 4152356 AATTACTCTACCAACTAAGAATGGCCATGCA 4152326 >seq21 Length=27742158 Score = 80.6 bits (88), Expect = 4e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 66 ||||||||||||||||||| |||| | ||||||||||||||||||||||||| Sbjct 18206263 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGT 18206314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796779266766