Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq21 336 4e-90
seq82 219 7e-55
seq36 201 2e-49
seq175 86.0 1e-14
seq11 77.0 6e-12
>seq21
Length=27742158
Score = 336 bits (372), Expect = 4e-90
Identities = 250/291 (86%), Gaps = 1/291 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 21633602 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 21633661
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 21633662 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 21633721
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 21633722 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 21633781
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 21633782 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 21633841
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 290
| ||| | || | |||||||| ||||| | |||||| ||| ||||
Sbjct 21633842 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTA 21633892
>seq82
Length=10068113
Score = 219 bits (242), Expect = 7e-55
Identities = 192/239 (80%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116
|||| ||| |||||| ||||||||||||| |||| |||||| ||||||||||| ||||
Sbjct 2906729 CTCAAGACAGTCTAATCCCAGCTCACGTTTCCTAGGAGTGGGAGAACAATCCAATGCTTG 2906788
Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176
|||||||||||| ||||| |||||||| |||||| |||||||||||||| || ||
Sbjct 2906789 GTGAATTCTGCTTCACAATGATTGGAAGAGCTGACATCAAAGGATCAAAAAGCGACATCA 2906848
Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236
|||||||| |||||| || ||||| ||||||||||||||||||||| ||| ||||||
Sbjct 2906849 CTATGAACACTTGGCCTCCTCAAGCTAGTTATCCCTGTGGTAACTTTCCTGACACCTCCT 2906908
Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|| | ||| | || | |||||||| ||||| | ||||| |||| || ||||||
Sbjct 2906909 GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCGTGGTCTGCATTCAC 2906967
>seq36
Length=19594188
Score = 201 bits (222), Expect = 2e-49
Identities = 150/176 (85%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 5055326 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 5055267
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 5055266 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 5055207
Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||| | || | ||||||| ||||| | |||||| |||||||| |||
Sbjct 5055206 TTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCCGCTTTCACGGTTTGTAGTCA 5055151
>seq175
Length=3172850
Score = 86.0 bits (94), Expect = 1e-14
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177
||| ||||||||| ||||||||||||||| ||| ||||||||||||| | |||| ||
Sbjct 2998500 CGAGTTCTGCTTCACAATGATAGGAAGAGCCAACACTGAAGGATCAAAAATCCACGTTGC 2998559
Query 178 TATGAACGCTTGGCTGCCACAAGCC 202
|||||| |||||| ||||||||
Sbjct 2998560 TATGAAATCTTGGCCAACACAAGCC 2998584
>seq11
Length=43820709
Score = 77.0 bits (84), Expect = 6e-12
Identities = 64/77 (83%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 6 AGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCATGAC 64
||| | |||||||| | | ||| ||||||||||||||||||||| |||||| ||||
Sbjct 41287676 AGCAGGATTACCATGGCAACAACGTATCATCAGTAGGGTAAAACTAATCTGTCTTGTGAC 41287735
Query 65 GGTCTAAACCCAGCTCA 81
|||||||| ||||||||
Sbjct 41287736 GGTCTAAATCCAGCTCA 41287752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854377050816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |