Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq21 336 4e-90 seq82 219 7e-55 seq36 201 2e-49 seq175 86.0 1e-14 seq11 77.0 6e-12 >seq21 Length=27742158 Score = 336 bits (372), Expect = 4e-90 Identities = 250/291 (86%), Gaps = 1/291 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 21633602 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 21633661 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 21633662 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 21633721 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 21633722 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 21633781 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 21633782 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 21633841 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 290 | ||| | || | |||||||| ||||| | |||||| ||| |||| Sbjct 21633842 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTA 21633892 >seq82 Length=10068113 Score = 219 bits (242), Expect = 7e-55 Identities = 192/239 (80%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 |||| ||| |||||| ||||||||||||| |||| |||||| ||||||||||| |||| Sbjct 2906729 CTCAAGACAGTCTAATCCCAGCTCACGTTTCCTAGGAGTGGGAGAACAATCCAATGCTTG 2906788 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||||||||| ||||| |||||||| |||||| |||||||||||||| || || Sbjct 2906789 GTGAATTCTGCTTCACAATGATTGGAAGAGCTGACATCAAAGGATCAAAAAGCGACATCA 2906848 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 |||||||| |||||| || ||||| ||||||||||||||||||||| ||| |||||| Sbjct 2906849 CTATGAACACTTGGCCTCCTCAAGCTAGTTATCCCTGTGGTAACTTTCCTGACACCTCCT 2906908 Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 || | ||| | || | |||||||| ||||| | ||||| |||| || |||||| Sbjct 2906909 GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCGTGGTCTGCATTCAC 2906967 >seq36 Length=19594188 Score = 201 bits (222), Expect = 2e-49 Identities = 150/176 (85%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 5055326 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 5055267 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 5055266 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 5055207 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | || | ||||||| ||||| | |||||| |||||||| ||| Sbjct 5055206 TTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCCGCTTTCACGGTTTGTAGTCA 5055151 >seq175 Length=3172850 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 ||| ||||||||| ||||||||||||||| ||| ||||||||||||| | |||| || Sbjct 2998500 CGAGTTCTGCTTCACAATGATAGGAAGAGCCAACACTGAAGGATCAAAAATCCACGTTGC 2998559 Query 178 TATGAACGCTTGGCTGCCACAAGCC 202 |||||| |||||| |||||||| Sbjct 2998560 TATGAAATCTTGGCCAACACAAGCC 2998584 >seq11 Length=43820709 Score = 77.0 bits (84), Expect = 6e-12 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 6 AGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCATGAC 64 ||| | |||||||| | | ||| ||||||||||||||||||||| |||||| |||| Sbjct 41287676 AGCAGGATTACCATGGCAACAACGTATCATCAGTAGGGTAAAACTAATCTGTCTTGTGAC 41287735 Query 65 GGTCTAAACCCAGCTCA 81 |||||||| |||||||| Sbjct 41287736 GGTCTAAATCCAGCTCA 41287752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854377050816