Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq21 100 5e-19 seq114 87.8 3e-15 seq50 86.0 1e-14 seq39 86.0 1e-14 seq125 82.4 1e-13 seq2 80.6 4e-13 seq87 78.8 2e-12 seq19 78.8 2e-12 seq166 77.0 5e-12 seq17 75.2 2e-11 seq136 73.4 6e-11 >seq21 Length=27742158 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | ||||| | || | || |||| || || | Sbjct 21633604 GTACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 21633547 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 21633546 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 21633493 >seq114 Length=7082604 Score = 87.8 bits (96), Expect = 3e-15 Identities = 90/114 (79%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||| | | |||||| | ||||||| || | || |||| | || | Sbjct 232653 GTAC-AGAGGAACCACAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGAGGGGCCAAT 232709 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 232710 GGGGCGAAGCTACAATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 232763 >seq50 Length=16452072 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 12289490 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 12289548 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| |||||||||||||||||||||||| Sbjct 12289549 GGGATTATGACTGAACGCCTCTAAGTCAGAATCC 12289582 >seq39 Length=18744880 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 3816962 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 3816904 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| |||||||||||||||||||||||| Sbjct 3816903 GGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3816870 >seq125 Length=6287927 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| |||||||||||||| Sbjct 2945399 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 2945340 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 2945339 GTCAGAATCC 2945330 >seq2 Length=71252344 Score = 80.6 bits (88), Expect = 4e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || || || |||||||||||||||| |||||||| ||||||||||||||||| Sbjct 49680261 CTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTC 49680320 Query 108 AGAATCC 114 ||||||| Sbjct 49680321 AGAATCC 49680327 >seq87 Length=9475965 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 32 TGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGC 91 |||||| || | || |||| || || || | |||||||||||||| |||||||| | Sbjct 8782737 TGGTTTATGTGCTTGGCTGAGGAGCCAATGGGGTGAAGCTACCATCTGTGGGATTATGAC 8782678 Query 92 TGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||| Sbjct 8782677 CGAACGCCTCTAAGTCAGAATCC 8782655 >seq19 Length=29834108 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 27540775 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 27540725 Score = 73.4 bits (80), Expect = 6e-11 Identities = 77/99 (78%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || | ||||||||||||| Sbjct 6091256 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGTGAAGCTACCATCTCT 6091314 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 |||||||| ||||| |||||||||||||||||| |||| Sbjct 6091315 GGGATTATGACTGAATGCCTCTAAGTCAGAATCC-TGCC 6091352 >seq166 Length=3507382 Score = 77.0 bits (84), Expect = 5e-12 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||| ||||| Sbjct 1973148 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACGATCTGT 1973206 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| |||||||||| ||||||||||||| Sbjct 1973207 GGGATTATGACTGAACGCCTGTAAGTCAGAATCC 1973240 >seq17 Length=31320352 Score = 75.2 bits (82), Expect = 2e-11 Identities = 51/56 (91%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 |||||||||||||||| |||||||| ||||||| |||||||||||||||| |||| Sbjct 20843976 GCGAAGCTACCATCTGTGGGATTATGACTGAACGTCTCTAAGTCAGAATCC-TGCC 20844030 >seq136 Length=5571892 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||| | | |||||| | ||| | | || | || |||| || || | Sbjct 2307970 GTACAAGAGGAACCACA-AGTTCAGAC-ATTTGTTGTATGTGCTTGGCTGAGGAGCCAAT 2308027 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || |||||| |||||| |||||||| || || |||||||||||||||||| Sbjct 2308028 GAGGCAAAGCTAGCATCTGTGGGATTATGACTAAATGCCTCTAAGTCAGAATCC 2308081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819178683904