Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq37 168 5e-37 seq132 98.7 8e-16 seq22 89.7 4e-13 >seq37 Length=19344684 Score = 168 bits (186), Expect = 5e-37 Identities = 573/875 (65%), Gaps = 21/875 (2%) Strand=Plus/Minus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 |||||||||||||| ||||| |||| | || || |||| ||| || ||||||||| Sbjct 212181 TTCCCCATCGAGTACCCCGATATCTGGCAGACATATAAGAAGGGGGAGGCCTCCTTCTGG 212122 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCG 61183 || ||||||| || ||||||| ||| | ||||||| | | | | | | Sbjct 212121 ACCACCAAGGAGGTGGACCTGTCCAAGGACGTTTGGCACTGGGAATCCCTGAAGCCCGAG 212062 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || || || || || || |||| |||||||| || | || || || | Sbjct 212061 GGGAGATACTTTATATCCCAC--GTTCTGGCTTTCTTTGCAGCAAGTTATGGCATAGTAA 212004 Query 61244 ATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||| || || |||| || ||| || || || || || | | || || | |||||| Sbjct 212003 ATGAAAACTTGGTGGAGCGATTTAGC-CAAGAAGTTCAGATCACAGAAGCCCACTGTTTC 211945 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || |||||||| || |||||| | || | || || || || || ||| | || || || Sbjct 211944 TATGGCTTCCAAATGGCCATGAAAAACATACATTCTGAAATATATAGTCTCCTTATTGAC 211885 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 || ||||| | || | ||| | ||| | |||||||| || || ||||| || Sbjct 211884 ACTTACATAAAAGATCCCAACGAAAGGGAATTTCTCTTCAATGCTATTGAAACGATGCCT 211825 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACAT 61480 || ||| ||| || ||||||||||| ||| | | |||| |||||| | Sbjct 211824 TGTGTCAAGAAGAAGGCAGATTGGGCCTTGCTCTGGGT--TGGGGACAAAGAGGCTACCT 211767 Query 61481 TTGGTGAAC-GATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 |||||||| |||| || ||||| | || || || | || || ||| || ||| Sbjct 211766 ATGGTGAACACGTTGC-AGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTT 211708 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-A 61598 || | || || ||| | |||||||| ||||| ||||| || || || || |||| | Sbjct 211707 GCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAA 211648 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658 || | || | || ||||| | || |||||||| ||| || | ||||||| | Sbjct 211647 CTTACTGGCA-GAGATGAGGGTTTACACTGTGATTTCGCTTGCCTGATGTTCAAAC---A 211592 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAG-GCGGTAACTA 61717 | || | || || |||||| | || | || || || | || || || | Sbjct 211591 CCAAGTACACAAACCATCAGAGGAGAGAGTAAGAGAAATAATT-ATCAGTGCTGTTCGGA 211533 Query 61718 TCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGAC 61777 | |||||||| || || ||||| || ||||| || ||||| || |||||||| | Sbjct 211532 TGGAACAGGAGTTCCTTACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTC 211473 Query 61778 TAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC 61837 ||||| ||| || ||||| ||||| || ||| | || || | || ||||| | ||| Sbjct 211472 TAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGT-TTTAGC 211414 Query 61838 GGATCTATAATACGA-AAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896 | | | | | | | || |||||||| || ||||| | ||||| ||||| || || Sbjct 211413 AGGGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAC 211354 Query 61897 ACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || || || || ||||| | ||||| | ||||| Sbjct 211353 ACTAACTTCTTTGAGAAGAGAGTAGGTAAGTATCA 211319 >seq132 Length=5918258 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 973979 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 974038 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 974039 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 974085 >seq22 Length=27210278 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 |||||| || || || ||||| | |||||||||||||| | || || |||| ||||| Sbjct 23201324 AGAGAACCCGCGCCGCTTCGTCATCTTCCCCATCGAGTACCACGACATCTGGCAGATGTA 23201265 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 ||| |||||||| || ||||||||||| | |||||||| Sbjct 23201264 CAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGT 23201226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554985363040