Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq37 168 5e-37
seq132 98.7 8e-16
seq22 89.7 4e-13
>seq37
Length=19344684
Score = 168 bits (186), Expect = 5e-37
Identities = 573/875 (65%), Gaps = 21/875 (2%)
Strand=Plus/Minus
Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125
|||||||||||||| ||||| |||| | || || |||| ||| || |||||||||
Sbjct 212181 TTCCCCATCGAGTACCCCGATATCTGGCAGACATATAAGAAGGGGGAGGCCTCCTTCTGG 212122
Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCG 61183
|| ||||||| || ||||||| ||| | ||||||| | | | | | |
Sbjct 212121 ACCACCAAGGAGGTGGACCTGTCCAAGGACGTTTGGCACTGGGAATCCCTGAAGCCCGAG 212062
Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243
| || || || || || || |||| |||||||| || | || || || |
Sbjct 212061 GGGAGATACTTTATATCCCAC--GTTCTGGCTTTCTTTGCAGCAAGTTATGGCATAGTAA 212004
Query 61244 ATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302
|||| || || |||| || ||| || || || || || | | || || | ||||||
Sbjct 212003 ATGAAAACTTGGTGGAGCGATTTAGC-CAAGAAGTTCAGATCACAGAAGCCCACTGTTTC 211945
Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362
|| |||||||| || |||||| | || | || || || || || ||| | || || ||
Sbjct 211944 TATGGCTTCCAAATGGCCATGAAAAACATACATTCTGAAATATATAGTCTCCTTATTGAC 211885
Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422
|| ||||| | || | ||| | ||| | |||||||| || || ||||| ||
Sbjct 211884 ACTTACATAAAAGATCCCAACGAAAGGGAATTTCTCTTCAATGCTATTGAAACGATGCCT 211825
Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACAT 61480
|| ||| ||| || ||||||||||| ||| | | |||| |||||| |
Sbjct 211824 TGTGTCAAGAAGAAGGCAGATTGGGCCTTGCTCTGGGT--TGGGGACAAAGAGGCTACCT 211767
Query 61481 TTGGTGAAC-GATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539
|||||||| |||| || ||||| | || || || | || || ||| || |||
Sbjct 211766 ATGGTGAACACGTTGC-AGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTT 211708
Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-A 61598
|| | || || ||| | |||||||| ||||| ||||| || || || || |||| |
Sbjct 211707 GCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAA 211648
Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658
|| | || | || ||||| | || |||||||| ||| || | ||||||| |
Sbjct 211647 CTTACTGGCA-GAGATGAGGGTTTACACTGTGATTTCGCTTGCCTGATGTTCAAAC---A 211592
Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAG-GCGGTAACTA 61717
| || | || || |||||| | || | || || || | || || || |
Sbjct 211591 CCAAGTACACAAACCATCAGAGGAGAGAGTAAGAGAAATAATT-ATCAGTGCTGTTCGGA 211533
Query 61718 TCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGAC 61777
| |||||||| || || ||||| || ||||| || ||||| || |||||||| |
Sbjct 211532 TGGAACAGGAGTTCCTTACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTC 211473
Query 61778 TAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC 61837
||||| ||| || ||||| ||||| || ||| | || || | || ||||| | |||
Sbjct 211472 TAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGT-TTTAGC 211414
Query 61838 GGATCTATAATACGA-AAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896
| | | | | | | || |||||||| || ||||| | ||||| ||||| || ||
Sbjct 211413 AGGGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAC 211354
Query 61897 ACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
|| || || || ||||| | ||||| | |||||
Sbjct 211353 ACTAACTTCTTTGAGAAGAGAGTAGGTAAGTATCA 211319
>seq132
Length=5918258
Score = 98.7 bits (108), Expect = 8e-16
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || |||||||| ||||| || ||| ||| ||||||
Sbjct 973979 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 974038
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || || || |||||||| ||
Sbjct 974039 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 974085
>seq22
Length=27210278
Score = 89.7 bits (98), Expect = 4e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100
|||||| || || || ||||| | |||||||||||||| | || || |||| |||||
Sbjct 23201324 AGAGAACCCGCGCCGCTTCGTCATCTTCCCCATCGAGTACCACGACATCTGGCAGATGTA 23201265
Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
||| |||||||| || ||||||||||| | ||||||||
Sbjct 23201264 CAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGT 23201226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397554985363040
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