Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq382080 161 8e-35 seq631619 152 4e-32 seq826513 96.9 3e-15 >seq382080 Length=1803 Score = 161 bits (178), Expect = 8e-35 Identities = 487/737 (66%), Gaps = 20/737 (3%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG- 61262 ||||| |||| ||||||| || | || || ||||| ||||| || | |||| || Sbjct 1364 CATGTTCTGGCTTTCTTTGTAGCATGTGATGGCATCGTAAATGAAAACCTGGTGGAGCGA 1305 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || || || || || | | || || || ||||| || |||||||| |||||||| Sbjct 1304 TTTAGC-CAAGAAGTTCACATTACAGAAGCCCGCTGTTTGTATGGCTTCCAAATTGCCAT 1246 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| || | | || || ||||| ||| | || || || || ||||| | || Sbjct 1245 GGAAAACATACCTTCTGAAATGTATAGTTTCCTTATTGACACTTACATTAAAGATTCCAA 1186 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 ||| | ||| || |||| |||||| || || || || || ||| ||| || || Sbjct 1185 AGAAAGGGAATTTTTCTTCAGTGCCATTGAAACCATGCCTTGTGTCAAGAAGAAGGCAGA 1126 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAA---CGGCTACATTTGGTGAACGATTGCTGGC 61499 ||||||||| |||||| | |||| |||||| | ||| ||||| | | || Sbjct 1125 TTGGGCCTTGCGTTGGAT--TGGGGACAAAGGAGGCTACCTATGGAGAACGTTGTGTAGC 1068 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | || || || | || || | ||| |||||||| || || ||| | || Sbjct 1067 TTTTGCAGCAGTAGAAGGAATCTTCTTTACTGGCTCGTTTGCATAGATATTCTGGCTCAA 1008 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA-TATCACGCGACGAGG 61618 | |||| |||| ||||| ||||| || || |||||| ||| || || | || ||| Sbjct 1007 GGAACGAAGACTGATGCCTGGTCTCACATTTTCCAATGAACTGATTAGCA-GAGATGAGA 949 Query 61619 GCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG 61678 | | || ||| || |||| || | ||||||| | ||| | | ||||| | Sbjct 948 GTTTACACTGTAATGTTGCCTACCTGATGTTCAAAC---ACCTGCTACACTATCCGTTAG 892 Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGT-AACTATCGAACAGGAATTTCTGACT 61737 || || | ||| || || || | || || || | |||||||| || || || Sbjct 891 AGCAGAGAGTGAAAGAAATCATTATCAATGCTGTCAAGAGTGGAACAGGAGTTCCTCACA 832 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 || |||||||| || ||||| | ||||| || | | ||| |||||| ||||| Sbjct 831 GAGGCTTTGCCTGTGAAGCTCATTGAGATGAACTG-CGCTTGATGAAGCAGTACATTGAG 773 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCG-GATCT--ATAATACGAAA 61854 ||||| ||| | | || || | || |||| || |||| | | | | | || | | Sbjct 772 TTTGTGGCCAATAGACTTATGCTGGAACTGGG-ATTTAGCGAGGTTTTCAGAGTAGG--A 716 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 || |||||||| || ||||| | |||| ||||| || ||||| || || || ||||| Sbjct 715 AATCCATTTGACTTTATGGAGAATATTTTACTGGAAGGAAAGACTAACTTCTTTGAGAAG 656 Query 61915 CGTGTAGGCGACTATCA 61931 | ||||| || ||||| Sbjct 655 AGAGTAGGTGAGTATCA 639 >seq631619 Length=7703 Score = 152 bits (168), Expect = 4e-32 Identities = 378/566 (67%), Gaps = 7/566 (1%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 ||||| || || || | ||| || || || | ||| || ||||||||| || ||| Sbjct 2435 AGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCCTCTTTGCTGGTATACTCTACTATT 2494 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || |||||||| || ||||| || | |||| ||||| || || ||||| |||| Sbjct 2495 TCTGTGCACAGGTTGCTGCATTTGATTGCTCCCAGGTTCTGCTGGTTGCTCTTATGATTA 2554 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || | || ||||| | |||||| || ||| | ||||| || |||||||| || || Sbjct 2555 CAGGAATTTTTGTAGAGCATGTAGGG-GTGTCAGTCTCTGTCTGAGACTCAATAATAGCA 2613 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCC-TACCTTTGCGT-TCGTAATGTT 66242 | |||||| | || ||||| || | || | | ||| | || || | || Sbjct 2614 TACCAAAGCTGCTGAGCTTTCACA--ACTTTGCGAATGTGACCCTGCTTCTCATACTTTT 2671 Query 66243 CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGAC 66302 | || || | || || ||| ||||| ||||| ||| | ||||||| | ||||| Sbjct 2672 CATATAGCTTCTCAAATTCTTCTCCCCAAACTTCATCCAGGCCAGGACACTCATTTGGAC 2731 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGA 66362 |||||| ||||| || || ||| || | ||| || ||||| | ||||| | Sbjct 2732 ACATCAAAGACCAGTCCTGATTAGTTTCCACCCATTTCATGAAGAGATCTGAAATCCAAA 2791 Query 66363 GGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCG 66421 |||| |||| ||||| | || || || || | || ||| || || || ||| Sbjct 2792 GGGCAAAGAAAAGATCCCTCGCATACTGTTCTTCCTTTCCTGTG-TTCTTCTTTAAATCG 2850 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 || |||||||||||||| |||| | |||| |||||| || || || | || | | | Sbjct 2851 AGAAACTCAAAGATGTCTAAATGCTAAGGTTTCAGGTAAATAGCAAATGCCCCAAGAAGC 2910 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 ||| |||||||| || ||||| ||||| ||| || | || | || ||| ||||| Sbjct 2911 TTGTTTCCACCTTGATCTACGTATCGAGCTGTATTACTGTATACTCTCAGCATTGGTACA 2970 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCC 66567 || || || || |||||||| || || Sbjct 2971 AGGCCATTGGAATTGCCATTAGTCCC 2996 >seq826513 Length=1995 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| || |||||||| ||| | | ||||| ||||||||||| ||||| || | Sbjct 761 TGGAACGCTTTAGTCAGGAGGTACAAATTCCAGAGGCTCGTTGTTTCTATGGCTTTCAAA 702 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || || || ||||| || | Sbjct 701 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATAAGAG 642 Query 61376 A 61376 | Sbjct 641 A 641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393493023167840