Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq575 147 3e-33 seq44792 132 7e-29 seq418 86.0 9e-15 seq39036 73.4 6e-11 >seq575 Length=6401254 Score = 147 bits (162), Expect = 3e-33 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || |||| ||||| ||| |||||| |||||| | Sbjct 1164517 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTA-ATGACCCGCACTTACTGGGAATT-C 1164460 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || ||||||||| |||||||||| || |||||| || || Sbjct 1164459 CTCGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCATGAATGGGTTTCAACAGGTT 1164400 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| | || ||| | || || ||| || |||||| || |||| Sbjct 1164399 ACCCGCGCCTGCCAGCACAGGGTAGGCACACGCTGAGCCAGTCCGTGTAGTGCATGTGCA 1164340 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 1164339 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTTGGGTGGC 1164287 >seq44792 Length=69869 Score = 132 bits (146), Expect = 7e-29 Identities = 162/217 (75%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||||| ||| || ||| |||||| | Sbjct 34971 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCGCACTCACTGGGAATT-C 34914 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | |||||||||||| ||| ||||||||| | ||||| | || Sbjct 34913 CTTGTTCATGGGGAACAATTGCAATCCCTGATCACCATCACGAATGGAGTTCAATGGGTT 34854 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| | || ||| | || || ||| |||||||||||| | ||| Sbjct 34853 ACCCGTGCCTGCCAGCATAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCACATGCA 34794 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 |||| |||||| ||||||||||||||||||||||| Sbjct 34793 GCCCCAGACATCTGAGGGCATCACAGACCTGTTATTG 34757 >seq418 Length=10642717 Score = 86.0 bits (94), Expect = 9e-15 Identities = 128/176 (73%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 30 AGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATC 89 ||||| ||||| | | |||||| |||||| ||||||| | | || ||||||||| | Sbjct 5189515 AGCTT-ATGACCCACACTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAATCCCC 5189458 Query 90 TATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAG-- 146 ||||||||||||| ||||| | |||||| |||| ||| ||| |||| Sbjct 5189457 AATCCCCATCACGAATGGGGTTCAACGGGTTACCCACGCCTGCTGGCATAGG--ATAGGC 5189400 Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202 || || ||| ||||||||||| |||||| |||| | ||||||||||||| || Sbjct 5189399 ACACGCTGAGCCAGTCAGTGTAGCGTGCGTGCAGCCCCGGACATCTAAGGGCAGCA 5189344 >seq39036 Length=955735 Score = 73.4 bits (80), Expect = 6e-11 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 208 |||||||||| ||||||| |||| |||||||||||||||||||||||| Sbjct 924255 TCAGTGTAGCACGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACC 924302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751630286250