Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq44792 127 9e-27 seq44261 96.9 1e-17 seq233 91.5 6e-16 seq49675 82.4 3e-13 seq49751 77.0 1e-11 seq43136 77.0 1e-11 >seq44792 Length=69869 Score = 127 bits (140), Expect = 9e-27 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| | ||| ||||||||| |||||||||||| | |||||||||||||||||||||||| Sbjct 39576 TGTTAGAACCTGAAAGATGGAGAACTATGCCTGGACAGGGTGAAGCCAGAGGAAACTCTG 39635 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||| | || ||| || ||||||||||| | ||| || ||||||||||||| Sbjct 39636 GTGGAGGTCCATAGTGGTCGTGACGTGCAAATCGGTAGTCCAACCTGGGTATAGGGGC 39693 Score = 91.5 bits (100), Expect = 6e-16 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 38507 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 38566 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||| |||| ||||||| || | ||||| ||||||| |||||| | Sbjct 38567 ACCAGCACGAGACCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 38626 Query 160 AGAGAGTT 167 |||||||| Sbjct 38627 AGAGAGTT 38634 >seq44261 Length=1981915 Score = 96.9 bits (106), Expect = 1e-17 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||||||||||||| |||| |||||||||||||||||||||||||| | || | Sbjct 374459 ATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCTTAGTG 374400 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 || || ||||||||| ||||||| | ||||||| Sbjct 374399 GTCCTAACGTGCAAATTGATCGTCTGACCTGGGTAT 374364 >seq233 Length=5988166 Score = 91.5 bits (100), Expect = 6e-16 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||| Sbjct 3660158 GGACCTGAAAGATAGTGAACTATGCCTGGGCAGGGTGAAGCTAGAGGAAACTCTGGTGGA 3660099 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || || ||| || | |||||||| || || | ||||| |||| || Sbjct 3660098 GGTCTATAGAGGTCCTAACATGCAAATCAGTCATCTGACCTGGGTGTAGGAGC 3660046 >seq49675 Length=655075 Score = 82.4 bits (90), Expect = 3e-13 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| | || | |||||||| ||| ||||||| |||| |||||||| |||||||| Sbjct 237828 TGTTAGTACTCAAAAGATGGCAAACCATGCCTGGGCAGGGCAAAGCCAGAAGAAACTCTT 237769 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | || ||| ||| | |||||||| || || | |||||||||||| || Sbjct 237768 GTGGAGGTCTGTAGAGGTCCTGACATGCAAATCAGTCTTCTGACCTGGGTATAGGGGTGA 237709 >seq49751 Length=3420067 Score = 77.0 bits (84), Expect = 1e-11 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||| | |||||||||||||||||||||| ||||| || || || ||||||||||||| Sbjct 178074 GGAGCTGAAAGATGGTGAACTATGCCTGGGTAGGGCAGAGACAAAGCAAACTCTGGTGGA 178015 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||| || || || |||| |||| || || || |||||||| || Sbjct 178014 GGTCTGTAGCAGTCTTGATGTAAAAATTGATCATCTGATCTGTATATAGGGGTGA 177960 >seq43136 Length=8286634 Score = 77.0 bits (84), Expect = 1e-11 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | | || ||||||||||||| | || |||| |||||| | | ||| | ||||||| Sbjct 7542096 GAGTTGGGGTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTGAGGCTAAAT 7542037 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | || ||||||||||| |||||| || | ||||| | ||||| |||||| Sbjct 7542036 ACCAGCACGAGACCGATAGTCACCAAGTACTGTAAGGGAAAGTTAAAAAGAACTTTG 7541980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078911412500