Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq44792 134 6e-30 seq44179 122 4e-26 seq801 98.7 5e-19 >seq44792 Length=69869 Score = 134 bits (148), Expect = 6e-30 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||| |||||||||||||| |||||||||||||||| ||| || Sbjct 38286 GGAAAAGAAACTAACCAGAATTCCCTCAGTAACAGCGAGTGAACAGGGAAAAGCTCAATA 38345 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||||||||||||||||| ||| |||||||||||| || Sbjct 38346 CTGAATCCCCGCCCCGCGGTGGAGCGTGGGACATGTGGCATA 38387 >seq44179 Length=1408350 Score = 122 bits (134), Expect = 4e-26 Identities = 89/101 (88%), Gaps = 8/101 (8%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||| | |||||| |||||||||||| Sbjct 1360850 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACAGGGAGTGA------AAGAGCCCAGCG 1360903 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGT 101 ||||||||||| |||||||| |||||||||| |||||| || Sbjct 1360904 CCGAATCCCCG-CCCGCGGT-GGGCGCGGGAAATGTGGAGT 1360942 Score = 122 bits (134), Expect = 4e-26 Identities = 89/101 (88%), Gaps = 8/101 (8%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||| | |||||| |||||||||||| Sbjct 1362979 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACAGGGAGTGA------AAGAGCCCAGCG 1363032 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGT 101 ||||||||||| |||||||| |||||||||| |||||| || Sbjct 1363033 CCGAATCCCCG-CCCGCGGT-GGGCGCGGGAAATGTGGAGT 1363071 >seq801 Length=3550426 Score = 98.7 bits (108), Expect = 5e-19 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 4 AAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCG 63 ||||||| ||||||||||||||||||||| |||||||||||||| || ||||||||| Sbjct 2228642 AAAGAAAGAAACCAGGATTCCCTCAGTAACA-CGAGTGAACAGGGACGAATCCAGCGCCG 2228700 Query 64 AATCCCCGCCCCGCGGTGGGGCGC 87 ||||| |||| | |||||||||| Sbjct 2228701 AATCCTAGCCCTGTGGTGGGGCGC 2228724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230290380000