Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq44792 210 3e-52 seq176 122 1e-25 seq482 118 2e-24 seq49801 104 4e-20 seq575 98.7 2e-18 seq47437 89.7 8e-16 seq39036 77.0 5e-12 >seq44792 Length=69869 Score = 210 bits (232), Expect = 3e-52 Identities = 202/255 (79%), Gaps = 17/255 (7%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| | ||| |||| |||||| ||||||||||||||||||||||| | Sbjct 34813 GTCAGTGTAGCGCACATGCAGCCCCAGACATCTGAGGGCATCACAGACCTGTTATTGT-T 34755 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 ||| || | || ||| | || | | |||||||||||||| | |||| || | Sbjct 34754 CAATCT-CGGGTGACTGAATGCAACTTGTCCCTCTAAGAAGTTGGGGGACACCGAC--TG 34698 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| ||| |||||| | || ||||||||| |||||||||||||| Sbjct 34697 CTCG--GGGGTCGCGTAACTAGTTAGCATGCTAGAGTCTCGTTCATTATCGGAATTAACT 34640 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| Sbjct 34639 AGACAAATCACTCCATCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGGGAAAG 34580 Query 244 AGCTATCAATCTGTC 258 ||||||||||||||| Sbjct 34579 AGCTATCAATCTGTC 34565 >seq176 Length=5307273 Score = 122 bits (134), Expect = 1e-25 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||| | ||| |||||||| || |||| ||||| || Sbjct 2667868 CTAGTTAGCATGCCAGCATCTCGTTCATCATCATAATTAACCTGAAGAATCGCTCCATCA 2667927 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||| Sbjct 2667928 ACTAAGAACAGCCATGTACCACCACCCATGGAATCGAGAAAGAGCTATCAATCTGTC 2667984 >seq482 Length=2269429 Score = 118 bits (130), Expect = 2e-24 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1250238 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATTGCTCCACCA 1250179 Query 202 ACTAAGAACGGCCATGCACCACCACCCA 229 ||||||||||||| |||||||||||||| Sbjct 1250178 ACTAAGAACGGCCGTGCACCACCACCCA 1250151 >seq49801 Length=3593481 Score = 104 bits (114), Expect = 4e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | ||||| ||| || || ||||||| ||||||||| | |||| Sbjct 1444291 CTAGTTAGCATTCCAGGGTCTTATTCATTTTCAGAATTAATCAGACAAATAGTTTCACCC 1444350 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| || ||| |||| ||||| ||||||||||||||||||| |||||||| Sbjct 1444351 ACTAAGAACAGCTATGTACCAGAACCCACAGAATCAAGAAAGAGCTATTAATCTGTC 1444407 >seq575 Length=6401254 Score = 98.7 bits (108), Expect = 2e-18 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||| |||||| || |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 1164359 GTCCGTGTAGTGCATGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 1164301 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| ||| |||||| | |||| | |||||||||||||| Sbjct 1164300 CAATCTT-GGGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 1164261 >seq47437 Length=609915 Score = 89.7 bits (98), Expect = 8e-16 Identities = 154/221 (70%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||| ||||| || | || | || | || ||||||||||||||| | || ||| ||| | Sbjct 494986 GTCATTGTAGTGCACATGTAGTCCTGGACTTCTAAGGGCATCACAAATCTTTTAGTGC-T 494928 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC--AACCATAG 132 ||| || | |||||| | |||| | ||||||||| ||| | | || | | | Sbjct 494927 CAATCT-CAGGTGGCTGAATGCCACTTGTCCCTCTACAAAGTTGGGGTCTGAAAGCTTGG 494869 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGT--------CTCGTTCGTTATCGGAATTAACCA 184 | ||| || || | ||||| | || ||| |||||| |||||||||| Sbjct 494868 GGGGGAGGGTCATATAACTAGTTAACATGCCAGAATCTTGTTGGTTATCAGAATTAACCA 494809 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 ||||||| | |||||||||||||| ||||||||| ||||| Sbjct 494808 GACAAATTGCACCACCAACTAAGAATGGCCATGCATCACCA 494768 >seq39036 Length=955735 Score = 77.0 bits (84), Expect = 5e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 63 || ||||||||||| ||||||| |||| |||||||||||||||||||||||| Sbjct 924251 TCAGTCAGTGTAGCACGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACC 924302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796408260750