Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq56 334 1e-89 seq44792 313 4e-83 seq40915 138 2e-30 seq45106 129 1e-27 seq39749 125 1e-26 seq40403 120 5e-25 seq41611 111 3e-22 >seq56 Length=51353 Score = 334 bits (370), Expect = 1e-89 Identities = 230/260 (88%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 34 TCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTA 93 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 33348 TCAGTAGGGTAAAACTAACCTGTCTCATGATGGTCTAAACCCAGCTCACGTTCCCTATTA 33407 Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 33408 GTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACAT 33467 Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 33468 CGAAGGATCAAAAAGTGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTG 33527 Query 214 TGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273 |||||||||||||| |||||| || | ||| | || | |||||||| ||||| Sbjct 33528 TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCC 33587 Query 274 CACTTTCATGGTTTGTATTC 293 | |||||| ||| ||||||| Sbjct 33588 CGCTTTCACGGTCTGTATTC 33607 >seq44792 Length=69869 Score = 313 bits (346), Expect = 4e-83 Identities = 246/293 (84%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||| ||||||| Sbjct 42438 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAATCTGTCTC 42379 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 42378 ATGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTAGGTGAACAATCCAACGCTTGGTG 42319 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 42318 AATTCTGTTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCACTA 42259 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||| |||||||||||||||||||||||||||||||| ||| ||||| || ||| || Sbjct 42258 TGAACACTTGGCTGCCACAAGCCAGTTATCCCTGTGGTGACTCTTCTGACATCTCCTGCT 42199 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | | | ||||||| ||||| |||||||||||| |||||| Sbjct 42198 TAAAACCCAAAAAGTCAGAAGGATCATGAGGCCCCACTTTCATGGTCTGTATT 42146 >seq40915 Length=1361293 Score = 138 bits (152), Expect = 2e-30 Identities = 91/101 (90%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| Sbjct 170216 GTCACCAGTAGGGTAAAACTAACCTTTCTCATGACAGTCTAAACCCAGCTCATGTTCCCT 170275 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||| ||||||||||||||||| |||| ||||||| |||| Sbjct 170276 ATTCGTGGGTGAACAATCCAATGCTTGGTGAATTCTCCTTC 170316 >seq45106 Length=25859 Score = 129 bits (142), Expect = 1e-27 Identities = 89/101 (88%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||| | Sbjct 16021 GTCATAAGTAGGGTAAAACTAACCTGTCTCACCATGGTCTAAACCCAGCTCATGTTCCGT 15962 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||||| |||| ||||| | |||| Sbjct 15961 ATTAGTGGGTGAACAATCCAATGCTTGGTGAATTATTCTTC 15921 >seq39749 Length=1974 Score = 125 bits (138), Expect = 1e-26 Identities = 87/99 (88%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| ||||||||||||| ||||||||||||| | ||||||||||||||||| |||| ||| Sbjct 1340 CATAAGTAGGGTAAAACCAACCTGTCTCATGGCAGTCTAAACCCAGCTCACATTCCATAT 1399 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||| |||| ||||| | |||| Sbjct 1400 TAGTGGGTGAACAATCCAATGCTTGGTGAATTATTCTTC 1438 >seq40403 Length=702 Score = 120 bits (132), Expect = 5e-25 Identities = 86/98 (88%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||| ||| ||||||||||||||||| |||| | ||||||||||||||||||||||| Sbjct 454 GTCATCATTAGTGTAAAACTAACCTGTCTTATGATGATCTAAACCCAGCTCACGTTCCCT 395 Query 90 ATTAGTGGGTGAACAATCCA--ACGCTTACCGAATTCT 125 | |||||||||||||||||| || ||| ||||| || Sbjct 394 ACTAGTGGGTGAACAATCCATCACACTTGTCGAATCCT 357 >seq41611 Length=27258 Score = 111 bits (122), Expect = 3e-22 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| ||||||||||||| | ||||||||| | | ||||||||||||||||| |||| | | Sbjct 6142 CATAAGTAGGGTAAAACCAGCCTGTCTCACGGCAGTCTAAACCCAGCTCACATTCCATGT 6201 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||| |||| ||||| | |||| Sbjct 6202 TAGTGGGTGAACAATCCAATGCTTGGTGAATTATTCTTC 6240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853966392000