Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq575 176 9e-42 seq44792 138 2e-30 seq418 111 3e-22 seq39036 77.0 6e-12 >seq575 Length=6401254 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 1164261 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 1164318 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||| || |||||| ||| | || || || | | Sbjct 1164319 ATGCCCTTAGATGTCCGGGGCTGCACATGCACTACACGGACTGGCTCAGCGTGTGCCTAC 1164378 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || || ||| |||||| || | |||| | || || ||||||| | |||| Sbjct 1164379 CCTGTGCTGGCAGGCGCGGGTAACCTGTTGAAACCCATTCATGATGGGGATCAGGGATTG 1164438 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| || |||||| Sbjct 1164439 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATTAGCTTGCATTGATT 1164498 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1164499 AAGTCCCTGCCCTTTGTA 1164516 >seq44792 Length=69869 Score = 138 bits (152), Expect = 2e-30 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 ||||||||||||||||||||||| |||||| |||| ||| | ||||||||||||| | Sbjct 34757 CAATAACAGGTCTGTGATGCCCTCAGATGTCTGGGGCTGCATGTGCGCTACACTGACTGG 34816 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT-CTGTCGTG 233 || || || | | ||| || || ||| |||||| | || |||| | ||||| Sbjct 34817 CTCAGCGTGTGCCTACCCTATGCTGGCAGGCACGGGTAA-CCCATTGAACTCCATTCGTG 34875 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||| ||| | ||||||||| || | | | ||| |||||| || ||| || ||| ||| Sbjct 34876 ATGGTGATCAGGGATTGCAATTGTTCCCCATGAACAAGGAATTCCCAGTGAGTGCGGGTC 34935 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| | |||||||| |||||||||||||||| Sbjct 34936 ATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 34970 >seq418 Length=10642717 Score = 111 bits (122), Expect = 3e-22 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 || ||||||||||||| | |||| |||||| |||||||||||| | || || || | | Sbjct 5189344 TGCTGCCCTTAGATGTCCGGGGCTGCACGCACGCTACACTGACTGGCTCAGCGTGTGCCT 5189403 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||| ||| | ||| ||||||| | | || | | ||||| ||||||| | | || Sbjct 5189404 ATCCTATGCCAGCAGGCGTGGGTAACCCGTTGAACCCCATTCGTGATGGGGATTGGGGAT 5189463 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||||| | | | |||||||||| || |||||| | | ||||| ||| Sbjct 5189464 TGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGGTCATAAGC 5189514 >seq39036 Length=955735 Score = 77.0 bits (84), Expect = 6e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||||||||||||||||||| |||| ||||||| ||||||||||| || Sbjct 924302 GGTCTGTGATGCCCTTAGATGTTCGGGGCTGCACGCGTGCTACACTGACTGA 924251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946719296000