Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq44792 340 5e-91 seq139 165 2e-38 seq45802 136 1e-29 seq43039 125 2e-26 seq42998 98.7 3e-18 seq630 96.9 1e-17 seq383 96.9 1e-17 seq44871 78.8 3e-12 >seq44792 Length=69869 Score = 340 bits (376), Expect = 5e-91 Identities = 413/555 (74%), Gaps = 57/555 (10%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| || | |||||||| ||||||| ||||| ||||||||||||| Sbjct 32834 ACTCATTCCAATTACAGAGCCTCAAAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTC 32775 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| || |||| ||||||||||| || |||||||||||||||||||||||||||| ||| Sbjct 32774 CCCAGGTTGGGAGTGGGTAATTTGGGCACCTGCTGCCTTCCTTGGATGTGGTAGCCATTT 32715 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||| |||| |||||| |||||| |||||| || | || | | |||||||||| Sbjct 32714 CTCAGGCTCCTTCTCTGGAATCAAACCCTGATTCCCTGTCATCCATGGTCACCATGGTAG 32655 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| |||||||| |||| || | | Sbjct 32654 GCACGGCAACTACCATCGAAAGTTGATAGGGCAGACGTTTGAATGGGTCATCACCACCAC 32595 Query 242 A-AGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286 | || | |||||| | | ||||| || ||||||| || |||| Sbjct 32594 AGGGGGCGTGCGATCAGCCCGAGGTTATCTAGAGTCACCAAAGCCACTGGCGCCCGCACC 32535 Query 287 -----CGAAGG--------------GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC 327 | ||| |||||| |||| |||| |||||| ||| | | || Sbjct 32534 CCCGGCCCAGGTGGGGGGGAGCTGACCGTTGG-TTTTGATCTGATAAATGCACACATCCC 32476 Query 328 GA---AGTC-GGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATC 376 | ||| ||||| | ||||||||||||||||| ||||||||| |||||| Sbjct 32475 CACCTTGTCAGGGGTCAGCACCCGTAAGCATGTATTAGCTCTATAATTACCACAGTTATC 32416 Query 377 CATGTAGTA-AGGTAC----TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431 || |||| | ||| | | |||| ||| |||||||||||||||||||||| |||| Sbjct 32415 CAAGTAGGAGAGGAGCAAGTGACCAAAGGAACCATAACTGATTTAATGAGCCATTTGCAG 32356 Query 432 TTTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 |||||||||| || || | ||||||||||||||||||||||||||||||| ||||| Sbjct 32355 TTTCACTGTACCAGCCATG--TGTACTTAGACATGCATGGCTTAATCTTTGAGATAAGCA 32298 Query 490 TATGACTACTGGCAG 504 |||| |||||||||| Sbjct 32297 TATG-CTACTGGCAG 32284 Score = 241 bits (266), Expect = 4e-61 Identities = 339/473 (72%), Gaps = 56/473 (12%) Strand=Plus/Minus Query 84 TGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATC 143 || || ||||| ||||||||||||||||||||| ||||||||||||| |||| |||||| Sbjct 28937 TGGGCCCCTGCCTCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCTTCTCTGGAATC 28878 Query 144 GAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAG 203 |||||| |||||| || | || | | |||||||||||| ||||||||||||| Sbjct 28877 AAACCCTGATTCCCTGTCATCCATGGTCACCATGGTAGGCACGGCAACTACCATCGAAAG 28818 Query 204 TTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC-CATGCGATTCGTT--A 260 ||||||||||||| |||||||| |||| || | || || | |||||| | | Sbjct 28817 TTGATAGGGCAGACGTTTGAATGGGTCATCACCACCACAGGGGGCGTGCGATCAGCCCGA 28758 Query 261 AGTTATTATGAATCACCAAGGA--------------------GCCCCGAAGGG------- 293 ||||| || ||||||| | |||| | ||| Sbjct 28757 GGTTATCTAGAGTCACCAAAGCCACTGGCGCCCGCACCCCCGGCCCAGGTGGGGGGGAGC 28698 Query 294 ----CGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA---GTCGGGGTTT------ 340 |||||||||| |||| |||||| ||| | | || | ||| ||| | Sbjct 28697 TGACCGTTGGTTTTG-ATCTGATAAATGCACACATCCCCACCTTGTCAGGGGTCAGCACC 28639 Query 341 --TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-A 393 | ||||||||||||||||| ||||||||| |||||||| |||| | || | | | Sbjct 28638 CGTAAGCATGTATTAGCTCTATAATTACCACAGTTATCCAAGTAGGAGAGGAGCAAGTGA 28579 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTT 451 |||| ||| |||||||||||||||||||||| |||||||||||||| || || | Sbjct 28578 CCAAAGGAACCATAACTGATTTAATGAGCCATTTGCAGTTTCACTGTACCAGCCATG--T 28521 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 28520 GTACTTAGACATGCATGGCTTAATCTTTGAGATAAGCATATG-CTACTGGCAG 28469 >seq139 Length=10686148 Score = 165 bits (182), Expect = 2e-38 Identities = 140/168 (83%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 54 ACTACCT-CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112 ||||||| |||| || | || |||||||||||| ||||||||||| |||||||| Sbjct 2049847 ACTACCTTCCCCAGGTTGAGAGTGGGTAATTTGCATATCTGCTGCCTTCATTGGATGT-- 2049790 Query 113 TAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA 172 ||| ||||||||||||||||||| ||||||||||||| |||||| || |||| | | | Sbjct 2049789 -AGCTGTTTCTCAGGCTCCCTCTCTGGAATCGAACCCTGATTCCCAGTCACCCATGGTCA 2049731 Query 173 CCATGGTAGGCCACTATC-CTACCATCGAAAGTTGATAGGGCAGAAAT 219 ||||||||||| || || |||||||||||||||||||||||||| || Sbjct 2049730 CCATGGTAGGC-ACGATGACTACCATCGAAAGTTGATAGGGCAGACAT 2049684 >seq45802 Length=1895411 Score = 136 bits (150), Expect = 1e-29 Identities = 122/152 (80%), Gaps = 7/152 (5%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| ||| | | | | | |||| Sbjct 1203725 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAATAGGAGAGGAGCGAGCGACCAAA 1203666 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||| ||||||||||| | | |||||| Sbjct 1203665 GGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACTGTACCGGCCGTGCGTACTTA 1203606 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCAT 490 |||||||||||||||||||| ||||| |||| Sbjct 1203605 GACATGCATGGCTTAATCTT--AGACATGCAT 1203576 >seq43039 Length=857995 Score = 125 bits (138), Expect = 2e-26 Identities = 98/112 (88%), Gaps = 5/112 (4%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGAT-TGCTTA 452 |||| ||| |||||||||||||||||||||||||||||||||||| || | ||| Sbjct 115944 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTGCCAGCTGTGC--G 116001 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| ||||||||||||||||||||||||||| ||||||| || Sbjct 116002 TACTTAGACATGCCTGGCTTAATCTTTGAGACAAGCATATG-CTACTGGTAG 116052 >seq42998 Length=189266 Score = 98.7 bits (108), Expect = 3e-18 Identities = 87/105 (83%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA-CTTAG 459 ||| |||||||||||||||||| |||| |||||||||||||| | | | | | ||||| Sbjct 122097 AACAATAACTGATTTAATGAGC-ATTCACAGTTTCACTGTATGGCTGCCATGTGGCTTAG 122155 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||| | ||||||||| Sbjct 122156 ACACATGTGGCTTAATCTTTGAGACAAGCATACG-TTACTGGCAG 122199 >seq630 Length=4422990 Score = 96.9 bits (106), Expect = 1e-17 Identities = 92/115 (80%), Gaps = 11/115 (10%) Strand=Plus/Minus Query 104 TGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC--GGAATCGAACCCTAATTCCCCGTT 161 |||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||| Sbjct 798759 TGGATGTGGTAGCC-TTTCTCAGGCTCTCTCTCTCTGGAATCGAAACCTAATTCCCCGTC 798701 Query 162 ACCCGTTGATACCATGGTAGGCCACTAT----CCTACCATCGAAAGTTGATAGGG 212 ||| || | ||||||||||| ||| |||||||| ||||| || |||| Sbjct 798700 ACCTGTGGTCACCATGGTAGG----TATGGCAACTACCATCCAAAGTCGAAAGGG 798650 >seq383 Length=10610733 Score = 96.9 bits (106), Expect = 1e-17 Identities = 123/163 (75%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-ATCAAAT 399 || |||||||||| ||||||||||| | ||||||| || || | | | | | | | Sbjct 9173587 TTGGCATGTATTATCTCTAGAATTATAATAGTTATCCGTGGAGGAGAGAAGTGAGTGACT 9173646 Query 400 AAACGAT-AACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTT 457 || || |||||| |||||| || || |||| |||||| | || ||| || ||| Sbjct 9173647 GAAGGAACAACTGACATAATGAAGCAATCACAGTCTCACTGCACCAGTGTGCGTA--CTT 9173704 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 500 |||||||||||||||||||||||| ||||| ||||| |||||| Sbjct 9173705 AGACATGCATGGCTTAATCTTTGAAACAAGTATATG-CTACTG 9173746 >seq44871 Length=25135 Score = 78.8 bits (86), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTATACTTA 458 ||| |||||||||||||| |||||||| |||||||| | ||| | | | |||| Sbjct 11575 AACCATAACTGATTTAATAAGCCATTCACAGTTTCAATATATGGCAACCATGTGTACT-- 11518 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||| |||||||||||||||||| ||| |||||||||| Sbjct 11517 CACAGGCATGACTTAATCTTTGAGACAAGTATA-CCCTACTGGCAG 11473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509633472000