Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq48864 159 3e-34 seq53 159 3e-34 seq199 96.9 3e-15 >seq48864 Length=438413 Score = 159 bits (176), Expect = 3e-34 Identities = 493/748 (66%), Gaps = 20/748 (3%) Strand=Plus/Minus Query 61193 ATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATT 61252 ||||||| ||||| |||| ||||||| || | || || ||||| ||||| || Sbjct 420478 ATTTCATATCCCATGTTCTGGCTTTCTTTGTAGCATGTGATGGCATCGTAAATGAAAACC 420419 Query 61253 TATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 | |||| || ||| || || || || | | | || || || ||||| || |||||| Sbjct 420418 TGGTGGAGCGATTTAGCCAAGAAGTTGACATTA-CAGAAGCCCGCTGTTTGTATGGCTTC 420360 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || ||||||||||| || | | || || ||||| ||| | || || || || ||||| Sbjct 420359 CAAATTGCCATGGAAAACATACCTTCTGAAATGTATAGTTTCCTTATTGACACTTACATT 420300 Query 61372 AGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAG 61431 | || ||| | ||| | |||| |||||| || || || || || ||| Sbjct 420299 AAAGATTCCAAAGAAAGGGAATTTCTCTTCAGTGCCATTGAAACCATGCCTTGTGTCAAG 420240 Query 61432 CGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA---CGGCTACATTTGGTGAA 61488 | | || ||||||||||| |||||| | |||| |||||| | ||| ||| Sbjct 420239 AAGGAGGCAGATTGGGCCTTGCGTTGGAT--TGGGGACAAAGGAGGCTACCTATGGAGAA 420182 Query 61489 CGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATC 61548 || | | || ||||| | || || || | || || | ||| |||||||| || Sbjct 420181 CGTTGTGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTACTGGCTCGTTTGCATAGATA 420122 Query 61549 TTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA-TATC 61607 || ||| | ||| |||| |||| ||||| ||||| || || |||||| ||| || | Sbjct 420121 TTCTGGCTCAAGGAACGAAGACTGATGCCTGGTCTCACATTTTCCAATGAACTGATTAGC 420062 Query 61608 ACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA 61667 | | || ||| | | || ||| || |||| || | ||||||||| ||| | | Sbjct 420061 A-GAGATGAGAGTTTACACTGTAATGTTGCCTACCTGATGTTCAAACGC---CTGCTACA 420006 Query 61668 TCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGT-AACTATCGAACAGG 61726 ||||| ||| || | ||| || || || | || || || | ||||||| Sbjct 420005 CTATCCGTTAGAGCAGAGAGTGAAAGAAATCATTATCAATGCTGTCAAGAGTGGAACAGG 419946 Query 61727 AATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGC 61786 | || || || || |||||||| || ||||| | ||||| || | | ||| || Sbjct 419945 AGTTCCTCACAGAGGCTTTGCCTGTGAAGCTCATTGAGATGAACTG-CGCTTGATGAAGC 419887 Query 61787 AGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCG-GATCT-- 61843 |||| ||||| ||||||||| | | || || | || |||| || |||| | | | Sbjct 419886 AGTACATTGAGTTTGTTGCCAATAGACTTATGCTGGAACTGGG-ATTTAGCGAGGTTTTC 419828 Query 61844 ATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATT 61903 | | || | ||| |||||||| || ||||| | |||| ||||| || ||||| || | Sbjct 419827 AGAGTAGG--AAATCCATTTGACTTTATGGAGAATATTTTACTGGAAGGAAAGACTAACT 419770 Query 61904 TTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || ||||| | ||||| || ||||| Sbjct 419769 TCTTTGAGAAGAGAGTAGGTGAGTATCA 419742 Score = 154 bits (170), Expect = 1e-32 Identities = 492/748 (66%), Gaps = 20/748 (3%) Strand=Plus/Minus Query 61193 ATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATT 61252 ||||||| ||||| |||| ||||||| || | || || ||||| ||||| || Sbjct 415555 ATTTCATATCCCATGTTCTGGCTTTCTTTGTAGCATGTGATGGCATCGTAAATGAAAACC 415496 Query 61253 TATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 | |||| || ||| || || || || | | | || || || ||||| || |||||| Sbjct 415495 TGGTGGAGCGATTTAGCCAAGAAGTTGACATTA-CAGAAGCCCGCTGTTTGTATGGCTTC 415437 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || ||||||||||| || | | || || ||||| ||| | || || || || ||||| Sbjct 415436 CAAATTGCCATGGAAAACATACCTTCTGAAATGTATAGTTTCCTTATTGACACTTACATT 415377 Query 61372 AGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAG 61431 | || ||| | ||| | |||| |||||| || || || || || ||| Sbjct 415376 AAAGATTCCAAAGAAAGGGAATTTCTCTTCAGTGCCATTGAAACCATGCCTTGTGTCAAG 415317 Query 61432 CGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA---CGGCTACATTTGGTGAA 61488 | | || ||||||||||| |||||| | |||| |||||| | ||| ||| Sbjct 415316 AAGGAGGCAGATTGGGCCTTGCGTTGGAT--TGGGGACAAAGGAGGCTACCTATGGAGAA 415259 Query 61489 CGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATC 61548 || | | || ||||| | || || || | || || | || |||||||| || Sbjct 415258 CGTTGTGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTACTGTCTCGTTTGCATAGATA 415199 Query 61549 TTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA-TATC 61607 || ||| | ||| |||| |||| ||||| ||||| || || |||||| ||| || | Sbjct 415198 TTCTGGCTCAAGGAACGAAGACTGATGCCTGGTCTCACATTTTCCAATGAACTGATTAGC 415139 Query 61608 ACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA 61667 | | || ||| | | || ||| || |||| || | ||||||||| ||| | | Sbjct 415138 A-GAGATGAGAGTTTACACTGTAATGTTGCCTACCTGATGTTCAAACGC---CTGCTACA 415083 Query 61668 TCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGT-AACTATCGAACAGG 61726 ||||| ||| || | ||| || || || | || || || | ||||||| Sbjct 415082 CTATCCGTTAGAGCAGAGAGTGAAAGAAATCATTATCAATGCTGTCAAGAGTGGAACAGG 415023 Query 61727 AATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGC 61786 | || || || || |||||||| || ||||| | ||||| || | | ||| || Sbjct 415022 AGTTCCTCACAGAGGCTTTGCCTGTGAAGCTCATTGAGATGAACTG-CGCTTGATGAAGC 414964 Query 61787 AGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCG-GATCT-- 61843 |||| ||||| ||||||||| | | || || | || |||| || |||| | | | Sbjct 414963 AGTACATTGAGTTTGTTGCCAATAGACTTATGCTGGAACTGGG-ATTTAGCGAGGTTTTC 414905 Query 61844 ATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATT 61903 | | || | ||| |||||||| || ||||| | |||| ||||| || ||||| || | Sbjct 414904 AGAGTAGG--AAATCCATTTGACTTTATGGAGAATATTTTACTGGAAGGAAAGACTAACT 414847 Query 61904 TTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || ||||| | ||||| || ||||| Sbjct 414846 TCTTTGAGAAGAGAGTAGGTGAGTATCA 414819 >seq53 Length=2810707 Score = 159 bits (176), Expect = 3e-34 Identities = 511/777 (66%), Gaps = 28/777 (4%) Strand=Plus/Minus Query 65797 CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAA 65856 ||||| || ||||| || |||||| ||||||| ||||| || ||||| |||| || Sbjct 1302856 CATCAAGATAAAAGCATCAGCCAGAACTTGAACCCCAATTCCAATGGGGTGATGGCGTTT 1302797 Query 65857 ATTGGA-ACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAAT 65915 ||| || |||| | ||||| || | ||||||||| || ||| ||||| |||||| | Sbjct 1302796 ATTTGATACGTAT-GCCTCTGGAATAGGGTAGTAGTTTCTATTAATAATTTTATTCAAGT 1302738 Query 65916 TGCGTGTCACCACATGCACGATACGTCGCAATTG--TTCGAAATCAAAATGTTTAGGACG 65973 | || | || ||| || || | || ||| | || | || | | || Sbjct 1302737 TTCG----AACA-ATG------ACTTC---AGTGACTTC--AGCCAGCTTCTTAAAGTCG 1302694 Query 65974 ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGC 66033 || | || | | | ||| || | ||||| || || || | ||| || || || Sbjct 1302693 TACGTGTGTTCTG-ATGTGACATACATATTCAGGGCCAGGGAAGCCAAGTTACAAACTGC 1302635 Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 | ||| || ||||||||| || ||||| |||||||| || ||||| || | Sbjct 1302634 AACCTCCTCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGC 1302575 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 |||| ||||| || || ||||| |||| || | || ||||| | |||||| || || Sbjct 1302574 TCCCAGGTTCTGCTGGTTGCTCTTATGATTACAGGAATTTTTGTAGAGCATGTAGGG-GT 1302516 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACG 66213 | | ||||| || |||||||| || || | |||||| | || ||||| || Sbjct 1302515 GTCAGTCTCTGTCTGAGACTCAATAATAGCATACCAAAGCTGCTGAGCTTTCACA--ACT 1302458 Query 66214 TACCGCCC-TACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT 66271 | | | | ||| | || || | ||| || || | || || ||| ||||| Sbjct 1302457 TTGTGAATGTGACCCTGCTTCTCATACTTTTCATATAGCTTCTCAAATTCTTCTCCCCAA 1302398 Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331 ||||| ||| | ||||||| | ||||||||||| ||||| || || ||| Sbjct 1302397 ACTTCATCCAGGCCAGGACACTCATTTGGACACATCAAAGACCAGTCCTGATTAGTTTCC 1302338 Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 || | ||| || ||||| | ||||| ||||| |||| ||||| | || | || Sbjct 1302337 ACCCATTTCATGAAGAGATCTGAAATCCAAAGGGCAAAGAAAAGATCCCTCGCATGCTGT 1302278 Query 66392 TCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGG 66450 || || | || ||| || || || ||||| |||||||||||||| |||| | || Sbjct 1302277 TCTTCCTTTCCTGTG-TTCTTCTTTAAATCGAGAAACTCAAAGATGTCTAAATGCTAAGG 1302219 Query 66451 TTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC 66510 || |||||| || || || | || | ||| ||| |||||||| || ||||| ||||| Sbjct 1302218 TTTCAGGTAAATAGCAAATGCCCCAAGACGCTTGTTTCCACCTTGATCTACGTATCGAGC 1302159 Query 66511 GACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| || | || | || ||| ||||| || || || || |||||||| || || Sbjct 1302158 TGTATTACTGTATACTCTCAGCATTGGTACAAGGCCATTGGAATTGCCATTAGTCCC 1302102 >seq199 Length=4383281 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| || |||||||| ||| | | ||||| ||||||||||| ||||| || | Sbjct 4198728 TGGAACGCTTTAGTCAGGAGGTACAAATTCCAGAGGCTCGTTGTTTCTATGGCTTTCAAA 4198787 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || || || ||||| || | Sbjct 4198788 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATAAGAG 4198847 Query 61376 A 61376 | Sbjct 4198848 A 4198848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397322097980000