Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq97010 86.0 3e-14 seq25629 84.2 9e-14 seq8225 84.2 9e-14 seq91647 78.8 4e-12 seq43272 77.0 1e-11 seq263641 75.2 5e-11 >seq97010 Length=932 Score = 86.0 bits (94), Expect = 3e-14 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 |||| ||||||||||||| | || || | |||||| | ||||| |||||||| ||| Sbjct 830 GTTGCTTGGGAATGCAGCCCAAAGTGAGTGGTAAACTCGATCTAAGGCTAAATACCGGCA 771 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||| ||||| ||||||| | | ||||| | ||||| |||||| | ||||||| Sbjct 770 TGAGACTGATAGTCAACAAGTACCTTAAGGGAAAGTTAAAAAGAACTTTGAAGAGAGAGT 711 Query 167 TAAAAAG 173 | || || Sbjct 710 TCAAGAG 704 >seq25629 Length=1011 Score = 84.2 bits (92), Expect = 9e-14 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||| || | ||||||| |||| |||||||| ||||||||||||| || || | || | Sbjct 979 TTTTAGCATGAGCATA--TGTTAGGACCCGACAGATGGTGAACTAAGCTTGGGCATGGAG 922 Query 606 AAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||||||||||| |||||||| Sbjct 921 AAGCCAGAGGAAACTCAGGTGGAGG 897 >seq8225 Length=17038 Score = 84.2 bits (92), Expect = 9e-14 Identities = 70/85 (82%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||| || ||||||| ||||| |||||| ||||||||||||||| |||| |||| Sbjct 14185 TTTTAGCAAGAGCA---CTGTTAGGACCCAAAAGATGGTGAACTAATCCTGGGCAGGGCC 14241 Query 606 AAGCCAGAGGAAACTCTGGTGGAGG 630 | ||||||||||||||||||||||| Sbjct 14242 AGGCCAGAGGAAACTCTGGTGGAGG 14266 >seq91647 Length=6889 Score = 78.8 bits (86), Expect = 4e-12 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||| | |||||||||||||||||||||| || ||||||||||| | |||| Sbjct 193 GTTAGGAACTGAAAGATGGTGAACTATGCCTGGGCAGAACAAAGCCAGAGGATATTCTGA 134 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||||| || ||| || ||| |||| |||| || || | ||||||||| Sbjct 133 TGGAGGTTCTTAGCAGTACTGAAGTGCCAATCTGTCATCTGACCTGGGTATAG 81 >seq43272 Length=183424 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 7/134 (5%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 97168 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGTTGGTAAACTCCATCTAAGGCTAAAT 97227 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||| ||||| ||||||| | | ||||| | ||||| | |||| | Sbjct 97228 A----CC--AGACAGATAGTCAACAAGTACCATAAGGGAAAGTTAAAAAG-AATTTGAAG 97280 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 97281 AGAGAGTTCAAGAG 97294 >seq263641 Length=5259 Score = 75.2 bits (82), Expect = 5e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 || |||||||||||| ||||| |||| |||||||||||||||||||||||||| || Sbjct 2475 AATGATGGTGAACTAAGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGCCCGT 2534 Query 636 AGCGGT 641 || ||| Sbjct 2535 AGTGGT 2540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2067995957950