Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq38686 127 3e-27 seq2334 120 5e-25 seq15652 80.6 4e-13 seq32980 78.8 1e-12 seq24636 73.4 6e-11 >seq38686 Length=206453 Score = 127 bits (140), Expect = 3e-27 Identities = 99/117 (85%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||| |||| |||| ||||||||||||||||||| |||||||| Sbjct 4052 CTAGTTAGCATGCCAGAGTCTGGTTCATTATTGGAATTAACCAGACAAATCGCTCCACCA 4111 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||||||||||||| |||| |||| | ||||||||||||| Sbjct 4112 TCTAAGAACAGCCATGCACCACCACCCATGGAATTGAGAA--ATCTATCAATCTGTC 4166 >seq2334 Length=1238109 Score = 120 bits (132), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 19/214 (9%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||| ||| |||||| ||| | |||||| ||||||||||||||||||||||| || Sbjct 246147 GTCAGTGAGGCGTGCGTGCAGCCACGGACATCTGAGGGCATCACAGACCTGTTATTG-CT 246089 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---CCAGCCACCAAC--CA 129 ||| | ||| |||||| | ||| | |||||||||||||| | ||| || | Sbjct 246088 CAATC-TCCGGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTTTGGGACACTGACTGCT 246030 Query 130 TAGTCGATGGGG-----------CTATTTAGCAGGTTAAGGTCTCGTT-CGTTATCGGAA 177 | | | |||| ||| |||||| | | ||||| || |||| || ||| Sbjct 246029 TGGGGGCGGGGGGTGTCGCGTAACTAGTTAGCATGCCAGAGTCTCCTTCCGTTGTCAGAA 245970 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACG 211 || ||||||||||||||||||||||||||||||| Sbjct 245969 TTCACCAGACAAATCACTCCACCAACTAAGAACG 245936 >seq15652 Length=479786 Score = 80.6 bits (88), Expect = 4e-13 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | |||| | || | |||||||||| ||||||| ||| ||||||| || Sbjct 187254 GTCAGTGTAGCACAAGTGCAGGCCCGGACATCTAAGGACATCACACACCCGTTATTG-CT 187196 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | ||| | |||||||||||||| Sbjct 187195 CAATC-TCGGGTGGCTGAACACCACTTGTCCCTCTAAGAAG 187156 >seq32980 Length=1037 Score = 78.8 bits (86), Expect = 1e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 901 GGCCATGCACCACCACCCACGGAATCAAGAAAGAGCTATCAATCTGTC 948 >seq24636 Length=65231 Score = 73.4 bits (80), Expect = 6e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| || ||||||||||||||| ||||||||| ||| |||| ||||||| || ||||| Sbjct 2820 TCTCATTTGTTATCGGAATTAACGAGACAAATCTCTCTACCAGCTAAGAATGGTGATGCA 2761 Query 220 CCA 222 ||| Sbjct 2760 CCA 2758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792480223749