Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7493 264 4e-68 seq1723 150 6e-34 seq1249 134 4e-29 seq3826 113 1e-22 seq1558 96.9 1e-17 >seq7493 Length=555936 Score = 264 bits (292), Expect = 4e-68 Identities = 209/246 (85%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||| ||| ||||||||| ||||||||||||| | | | || || ||| |||||| | Sbjct 387812 GACTAGATTCACGCTCAACAGCGTCTTCTTTCCCC-CAG-TCCCACCGAGCTCGTTCCTT 387869 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||| || || || ||||| | |||||||||||||||| ||| ||||||||||| Sbjct 387870 TGGCTGTGGTGTCACTGGACAGTAGGTTGGGACAGTGGGAATCTTGTTCATCCATTCATG 387929 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 | |||||||||||||||| | |||||||||||||||||||||| ||||||||| ||| Sbjct 387930 TGGGTCACTAATTAGATGAAG---CATTTGGCTACCTTAAGAGAGTTATAGTTACTTCCG 387986 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG-CACTGGGCAGAAA 517 | |||||||| | ||| ||||| ||||||||||||| |||||||| ||||| ||||||| Sbjct 387987 CTGTTTACCCTCACTTCATTGAACTTCTTCACTTTGATATTCAGAGCCACTGAGCAGAAA 388046 Query 518 TCACAT 523 ||||| Sbjct 388047 CCACAT 388052 >seq1723 Length=1657771 Score = 150 bits (166), Expect = 6e-34 Identities = 94/101 (93%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||||||||||||| ||| |||||||| |||||| ||||||||||||||| |||||||||| Sbjct 140547 TTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGAAAGTGGGAATCTCGTTCATCCATTCAT 140606 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 ||| |||||||||||||||||||||||||||||||||||| Sbjct 140607 GCGTATCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 140647 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||||||| |||||||||||||||| | ||||||| Sbjct 140809 ATTTCTTTACTTTGACATTCAGAGCATTGGGCAGAAATCACATCGAGTCAACA 140861 >seq1249 Length=819394 Score = 134 bits (148), Expect = 4e-29 Identities = 88/96 (92%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCC-GCGCTTGGTTGAATTTCTTCACTTTGACA 497 |||||| |||||||||||| |||||||||| || ||| ||||||||||||||||||||| Sbjct 650750 GAGAGTTATAGTTACTCCCACCGTTTACCCCGCACTTCATTGAATTTCTTCACTTTGACA 650691 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||| |||||||| Sbjct 650690 TTCAGAGCACTGGGCAGAAATCACATCACGTCAACA 650655 >seq3826 Length=669081 Score = 113 bits (124), Expect = 1e-22 Identities = 100/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||| |||||||||||||| ||| ||| |||||| ||| ||| ||| ||||||| |||| Sbjct 617609 TGACAAGGCATTTGGCTACTTTAGGAGGGTCATAATTATTCCTGCCATTTACCCATGCTT 617668 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||| ||||||||||| ||||||||| |||||||| || |||| ||| | ||||| Sbjct 617669 CATTGGATTTCTTCACTGTGACATTCACAGCACTGGACAAAAATTGCATCCTGCCAACA- 617727 Query 535 CACT 538 |||| Sbjct 617728 CACT 617731 >seq1558 Length=20999 Score = 96.9 bits (106), Expect = 1e-17 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 |||| | |||| ||||||||| | |||| |||||||||||| | |||||||||||||| Sbjct 5994 ATAGGTTCTCCTGCCGTTTACTCATGCTTCATTGAATTTCTTCTCATTGACATTCAGAGC 5935 Query 506 ACTGGGCAGAAATCACAT 523 |||||||||||||||||| Sbjct 5934 ACTGGGCAGAAATCACAT 5917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1626048946592