Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10961 172 2e-40 seq30924 161 3e-37 seq111508 98.7 3e-18 >seq10961 Length=625954 Score = 172 bits (190), Expect = 2e-40 Identities = 182/235 (77%), Gaps = 21/235 (9%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAA-AAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| |||| ||||| |||||| ||||| | ||||||||||| Sbjct 460118 ACTCATTCCAATTACAGGACCTTGGAAGAGTCCTGTACTGTTATTTTTCGTCACTACCTC 460059 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | || ||||||||||| | |||||||| ||||||||||| |||||| | || Sbjct 460058 CCAGAGT-------GGGTAATTTGCACACCTGCTGCTTTCCTTGGATGAGGTAGCTGGTT 460006 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC-CGTTACCCGTTG-----ATA--- 172 |||||||||||||||| ||||| |||||| |||||| | | |||||| | ||| Sbjct 460005 CTCAGGCTCCCTCTCCAGAATCAAACCCTGATTCCCTCATCACCCGTAGTCAACATAGTG 459946 Query 173 -CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 ||||||||| ||||| | |||||| ||| ||||||||||||| ||| |||| Sbjct 459945 GGCATGGTAGG-CACTA--CGACCATCAAAAATTGATAGGGCAGACATTCAAATG 459894 Score = 159 bits (176), Expect = 1e-36 Identities = 142/171 (83%), Gaps = 10/171 (6%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATC 395 || ||||||||||| |||||||| ||||| |||||||| | || | || | | | | Sbjct 459732 TTGGCATGTATTAGTTCTAGAATGACCACAGTTATCCAAGCAGGAGAGGAGCAAGTGACC 459673 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATTGCTTAT 453 ||| |||| ||||||||||||||||||||||||||||||||||| | || ||| | Sbjct 459672 AAAGAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACTGCACCAGCCCTGC--GT 459615 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 459614 ACTTAGACATGCATGGCTTGATCTTTGAGACAAGCATATG-CTACTGGCAG 459565 >seq30924 Length=138307 Score = 161 bits (178), Expect = 3e-37 Identities = 125/146 (86%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||| ||| ||| |||||||||| |||||||||||||||||||||||||||| ||| | || Sbjct 52216 GTCAGGAGTGGATAATTTGCGCACCTGCTGCCTTCCTTGGATGTGGTAGCCCTTTTTTAG 52275 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 | |||||||| ||||||||||||| ||||||| | |||| | | |||||||||||| ||| Sbjct 52276 GTTCCCTCTCTGGAATCGAACCCTGATTCCCCATCACCCATGGTTACCATGGTAGG-CAC 52334 Query 187 TAT-CCTACCATCGAAAGTTGATAGG 211 | |||||||||||||| |||||| Sbjct 52335 GGTGACTACCATCGAAAGTGGATAGG 52360 >seq111508 Length=1763 Score = 98.7 bits (108), Expect = 3e-18 Identities = 82/97 (85%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190 |||||||||||||||||||| |||||| || |||| | | |||||||||||| || | | Sbjct 375 CCTCTCCGGAATCGAACCCTGATTCCCTGTCACCCTTGGTCACCATGGTAGGC-AC-AGC 318 Query 191 --CTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 ||||||| |||||||||||||||||| ||||||| Sbjct 317 GACTACCATTGAAAGTTGATAGGGCAGACGTTTGAAT 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1501947363584