Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4803 102 6e-17 seq12971 98.7 8e-16 seq36578 95.1 1e-14 >seq4803 Length=331686 Score = 102 bits (112), Expect = 6e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || ||| |||||||||| |||||||| || ||||| | Sbjct 146572 CATGAAGAGATCTGGGATCCAAAGTGCGAAGAAGAGATCCCGTGCTCGCTGTTCCTCCTT 146513 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 146512 GCCAGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 146454 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 146453 AAATAGCAAA 146444 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| || ||||| || ||||| ||||| |||| ||||| || Sbjct 148728 GGTGTACTCTACTATTTCTGTACACAGGTTGCTGCACTTAATGGTTCCCAGGTTCTGCTG 148669 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || || || | || ||||| | |||||| || || || ||||| || Sbjct 148668 GTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTG 148609 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 148608 AGACTCAATGATGGCATACCAAAG 148585 >seq12971 Length=450841 Score = 98.7 bits (108), Expect = 8e-16 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 |||| || || || || ||||| | ||||| || |||||||| |||||||||||||||| Sbjct 9184 GTTTAGC-CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAGATTGCCA 9242 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||| || | |||||||||||||||||| | || || || || ||||| Sbjct 9243 TGGAAAACATTCACTCGGAGATGTACAGTCTCCTTATTGACACTTACAT 9291 >seq36578 Length=50456 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || || ||||| ||||| ||||| ||| |||||| Sbjct 1347 CAGGAGGTGCAGGTCCCAGAGGCTCGCTGCTTCTATGGCTTTCAGATCCTCATCGAGAAT 1406 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 1407 GTTCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCAGAGA 1453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394856396028560