Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq18024 174 2e-41 seq6961 170 3e-40 seq20442 156 6e-36 seq10808 131 3e-28 >seq18024 Length=276033 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 265965 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 265908 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 265907 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 265848 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 265847 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 265788 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 265787 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 265735 >seq6961 Length=175213 Score = 170 bits (188), Expect = 3e-40 Identities = 182/234 (78%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 172727 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGAC-CGCACTTACTGGGAATT-C 172783 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 172784 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 172843 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 172844 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 172903 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 172904 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 172956 >seq20442 Length=10053 Score = 156 bits (172), Expect = 6e-36 Identities = 185/238 (78%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| || || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 6126 GTACAAAGGGCAGG-ACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 6070 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGA-- 117 |||||| | | || ||||||||| | ||||||||||||| || ||||| | Sbjct 6069 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGGTTCAACGGGT 6010 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACT-CGTTGAATACATCAGTGTAGCGCGCG- 175 ||||||| |||| |||| ||| ||| | || ||| ||||||||||||||| Sbjct 6009 TTACCCGCGCCTGCCGGCGTAGGG--TAGGCAACGCTGAGCCAGTCAGTGTAGCGCGCGA 5952 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| |||| | |||||||||||||||||||||||||||||| ||||| | || ||||| Sbjct 5951 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATC-TCGGTGGC 5896 >seq10808 Length=7174 Score = 131 bits (144), Expect = 3e-28 Identities = 183/246 (74%), Gaps = 17/246 (7%) Strand=Plus/Minus Query 1 GTACAAA-GGGCAGGGACGTAGTCAACGCGAG--CTTGATGACTCG-CGCTTACTAGGAA 56 ||||||| |||||||||| || ||||||| || ||| ||||| || | |||||| |||| Sbjct 1774 GTACAAAAGGGCAGGGACTTAATCAACGCAAGGGCTT-ATGACCCGGCACTTACT-GGAA 1717 Query 57 TTTCCTCGTTGA---AGACCAACAATT-GCAATGATCTATCCCCATCACGATGAAAT--- 109 ||||||||| | ||| || |||| ||||| | ||||||||| | | ||| Sbjct 1716 ATTCCTCGTTCATGGAGATAAATAATTAGCAATCCCCGATCCCCATCC--ACGCAATGGG 1659 Query 110 TTCAAA--GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGT 167 |||||| | ||||||| |||| |||| ||| | || || ||| ||||||| Sbjct 1658 TTCAAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGT 1599 Query 168 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||||||| ||| |||| | ||||||||||||||||||||||||||| | ||||| || Sbjct 1598 AGCGCGCTTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTAATTGCTCAATCTCG 1539 Query 228 CGTGGC 233 ||||| Sbjct 1538 GGTGGC 1533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751845871255