Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq18024 98.7 6e-19 seq6961 98.7 6e-19 seq20442 89.7 3e-16 >seq18024 Length=276033 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 265432 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 265373 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 265372 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 265316 >seq6961 Length=175213 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 173258 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 173317 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 173318 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 173374 >seq20442 Length=10053 Score = 89.7 bits (98), Expect = 3e-16 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCC-GAGCGAGTCAAAATGATAACATCGCC 59 |||||||||||||||| |||| || ||| |||| | ||| |||| ||||| |||| Sbjct 5592 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGGCGGGTCATGGGAATAACGCCGCC 5533 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||| ||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 5532 GCATCGCCGGTCG-CATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 5476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278344780230