Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq18024 170 4e-40 seq20442 140 6e-31 seq6961 140 6e-31 seq16198 120 6e-25 >seq18024 Length=276033 Score = 170 bits (188), Expect = 4e-40 Identities = 208/278 (75%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 265034 ATGCTCTTAGCTGAGTGTCCCGCGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 265092 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 265093 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 265151 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 265152 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 265211 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 265212 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 265271 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 265272 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 265308 >seq20442 Length=10053 Score = 140 bits (154), Expect = 6e-31 Identities = 207/280 (74%), Gaps = 14/280 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 5198 ATGCTCTTAGCTGAGTGTCCCGCGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 5256 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||| ||||| |||| Sbjct 5257 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA-AGGAC-CGCGG 5314 Query 155 TTCTATTTTGTTGGTTTCTAGG--ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||| | || || | | |||||||| | ||| | ||||| | Sbjct 5315 TTCTATTTTGTTGGTTT-TCGGAAACTGAGGCCATGATTAAGA-GGACGGCCGGGGCATT 5372 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 | ||||| | |||||||||||||||||| ||||| || | ||||||| Sbjct 5373 C-GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAG 5431 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | || ||||| ||| |||||||||||| |||||||||| Sbjct 5432 CATTTGCCAAGAATG-TTTCATTAATCA-AGAACGAAAGT 5469 >seq6961 Length=175213 Score = 140 bits (154), Expect = 6e-31 Identities = 203/278 (73%), Gaps = 9/278 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| ||| |||| ||| || ||| | | |||||||||||||| |||||||||| Sbjct 173654 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAGCGTTTACTTTGAAAAA-TTAGAGTGTT 173596 Query 99 CAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAA-TAGGACGTGCGG 154 ||||||||| | || | |||| || |||||||| ||| |||||| |||| Sbjct 173595 CAAAGCAGGGCCCGGCCGCCTGGATACCGC-GCTAGGAATAATGGAAATAGGACC-GCGG 173538 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||||||| |||||||| | || | | |||||||| ||||| | |||||| | Sbjct 173537 TTCTATTT-GTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 173479 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 173478 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 173419 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 173418 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 173382 >seq16198 Length=237580 Score = 120 bits (132), Expect = 6e-25 Identities = 181/249 (73%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAA-ATTAGAGTGTTCAA--AGCAGG-CCTTTGCTC---GAATACAT 124 |||||||||||||||| ||||| ||| |||| |||||| ||| || | |||| Sbjct 15531 CTTTTACTTTGAAAAAGATTAG-GTGGTCAACAAGCAGGGCCTGAGCCACCTGGATACTG 15589 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||| |||||||||||||||||| || ||||||||||| ||| || | | || | | Sbjct 15590 CAGCTAGGAATAATAGAATAGGACC-GCAGTTCTATTTTGCTGGATTTTGGAACTGAGGC 15648 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 |||||||| |||||| | |||| | |||| | ||||||||||||||||| Sbjct 15649 CATGATTAAGAGGGATGGCTTGGGGCATTCTTATTGTGCCGCTAGAGGTGAAATTCTTGG 15708 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 | | ||||| || | |||||| | || ||||| |||||||||||||||| || Sbjct 15709 ACTGGAACAAGACAGACCAGAGCGAAAACATTTGCCAAGAATGTTTTCATTAATCA-AGA 15767 Query 305 ACGAAAGTT 313 | ||||||| Sbjct 15768 ATGAAAGTT 15776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915006371136