Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq20301 147 9e-33 seq18024 147 9e-33 seq10580 147 9e-33 seq6961 147 9e-33 seq10808 127 9e-27 seq17664 125 3e-26 seq16198 113 2e-22 seq17663 93.3 2e-16 >seq20301 Length=17530 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 || ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 1637 GTCGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 1696 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1697 TGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1755 Score = 105 bits (116), Expect = 3e-20 Identities = 123/162 (76%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGG-AATGCAGCTCTAAATGGGA-GGTAAATTTCTTCTAAAGCTAA 97 |||||| |||| ||||| |||||||| | || ||| |||||| | | ||||| ||||| Sbjct 475 GAGTCGGGTTGCTTGGGGAATGCAGCCCAAAGCGGGGTGGTAAACTCCATCTAAGGCTAA 534 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 ||| ||| |||||||||||| ||||||| || | | ||| ||||||| |||||| Sbjct 535 ATACCGGCACGAGACCGATAGCCAACAAGTACCGTTAAGGGAAGTTGAAAAGAACTTTGA 594 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | |||||||| || || ||||||| ||| | ||| || || Sbjct 595 AGAGAGAGTTCAAGAG-GCGTGAAACCGTTAAGAGGTAAACG 635 >seq18024 Length=276033 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 || ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 270770 GTCGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 270829 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 270830 TGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 270888 Score = 120 bits (132), Expect = 1e-24 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTT-GTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| | ||||||||||||| | || ||| |||||| | | ||||| |||||| Sbjct 269580 GAGTCGGGTTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAA 269639 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| |||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 269640 TACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAA 269699 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 269700 GAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 269740 >seq10580 Length=26653 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 || ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 14185 GTCGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 14126 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 14125 TGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 14067 >seq6961 Length=175213 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 || ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 167981 GTCGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 167922 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 167921 TGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 167863 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 169158 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 169099 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 169098 ACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 169039 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 169038 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 168999 >seq10808 Length=7174 Score = 127 bits (140), Expect = 9e-27 Identities = 125/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 5303 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 5362 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 5363 ACCGGC-AGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 5421 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 5422 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 5461 Score = 91.5 bits (100), Expect = 6e-16 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 || |||||||||||| ||||||||||||| || |||| ||| ||||||||||||||| Sbjct 6482 GTCGGGACCCGAAAGCTGGTGAACTATGC-TGCGCAGGGCGAA--CAGAGGAAACTCTGG 6538 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653 |||||| || |||||| ||| ||||||| Sbjct 6539 TGGAGGTCCGTAGCGGTCCTGACGTGCAA 6567 >seq17664 Length=22148 Score = 125 bits (138), Expect = 3e-26 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| Sbjct 7283 GGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGAAAACTCTGGTGG 7342 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| | |||||| ||| |||||||||| ||||| | |||||||| |||| Sbjct 7343 AGGTCCTTAGCGGTCCTGACGTGCAAATCAGTCGTCCGACCTGGGTATACGGGC 7396 >seq16198 Length=237580 Score = 113 bits (124), Expect = 2e-22 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| | Sbjct 19932 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGTAAACTCTGGTGTA 19991 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || | ||| |||||| | |||||||| ||||| | |||||||||||| Sbjct 19992 GGTCTGTAGCAGTTCTGACATGCAAATCAGTCGTCCGACCTGGGTATAGGGG 20043 Score = 105 bits (116), Expect = 3e-20 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || | || || ||| | | ||||| ||||||| Sbjct 18997 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGTAGGTGGAAAACTCCATCTAAGGCTAAAT 19056 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||| ||||| ||||||| || | |||| ||||||| |||||| | Sbjct 19057 ACTGGCACGAGACCAATAGCCAACAAGTACCGTAAGGAAAAGTTGAAAAGAACTTTGAAG 19116 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || | ||||| Sbjct 19117 AGAGAGTTCAAGAGGGCATGAAA 19139 >seq17663 Length=55951 Score = 93.3 bits (102), Expect = 2e-16 Identities = 83/99 (84%), Gaps = 5/99 (5%) Strand=Plus/Plus Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG--GAAACTCTGGT 625 ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| Sbjct 54153 GGGACCCGAAAGATGGTGAACTATGCCTG-GCAGGGCGAAGCCAGAGAAAAAACTCTGGT 54211 Query 626 GGAGGCTCGCAGCGGTT-CTGGCGTGCAAATCGATCGTC 663 |||| | ||||||| ||| |||||||||| ||||| Sbjct 54212 -GAGGTCCTTAGCGGTTCCTGACGTGCAAATCAGTCGTC 54249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079546182350