Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq18024 242 6e-62 seq6961 226 5e-57 seq10808 219 7e-55 seq20442 208 1e-51 seq365 158 2e-36 seq1663 125 1e-26 seq16198 107 3e-21 >seq18024 Length=276033 Score = 242 bits (268), Expect = 6e-62 Identities = 207/250 (83%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 265807 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 265749 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC--CAACCA-TA 131 ||| || | |||||| | |||| | |||||||||||||| | || | ||| | Sbjct 265748 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGACGCCGACCGCTC 265690 Query 132 GTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | | | | | ||| |||||| | | |||||||||||||||||||||||||||||| Sbjct 265689 GGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 265630 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 265629 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTA 265570 Query 249 TCAATCTGTC 258 || ||||||| Sbjct 265569 TCGATCTGTC 265560 >seq6961 Length=175213 Score = 226 bits (250), Expect = 5e-57 Identities = 208/256 (81%), Gaps = 18/256 (7%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 172884 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 172942 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC-AC-CAACCATAG 132 ||| || | |||||| | |||| | |||||||||||||| | || | ||| Sbjct 172943 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCGACCGC-- 172999 Query 133 TCGATGGGG---------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| ||| |||||| | | ||||||||||||||||||||||||| Sbjct 173000 TCG--GGGGTCCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACC 173057 Query 184 AGACAAATCACT-CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 ||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 173058 AGACAAATCGCTGCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAA 173117 Query 243 GAGCTATCAATCTGTC 258 |||||||| ||||||| Sbjct 173118 GAGCTATCGATCTGTC 173133 >seq10808 Length=7174 Score = 219 bits (242), Expect = 7e-55 Identities = 203/252 (81%), Gaps = 9/252 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||| ||| |||| | ||||||||||||||||||||||||||| | || Sbjct 1606 GTCAGTGTAGCGCGCTTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTAATTGCT 1547 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 1546 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 1488 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA- 186 | | | | | ||| |||||| | | ||||||||||||||||||||||||||| Sbjct 1487 CGGGGGTCGCGTAACTAGTTAGCATGCCAGATTCTCGTTCGTTATCGGAATTAACCAGAA 1428 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1427 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGC 1368 Query 247 TATCAATCTGTC 258 |||| ||||||| Sbjct 1367 TATCGATCTGTC 1356 >seq20442 Length=10053 Score = 208 bits (230), Expect = 1e-51 Identities = 207/259 (80%), Gaps = 23/259 (9%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCG-TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 |||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||| Sbjct 5968 GTCAGTGTAGCGCGCGATGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC- 5910 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCAT 130 |||| || | |||||| | || | | |||||||||||||| | | || ||| Sbjct 5909 TCAATCT--CGGTGGCTGAACGC-ACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGC 5853 Query 131 AGTCGATGGGG---------CTATTTAGCAGGTTAAGGTCT-CGTTCGTTATCGGAATTA 180 ||| |||| ||| |||||| | | |||| |||||||||||||||||| Sbjct 5852 --TCG--GGGGTCCGCGTAACTAGTTAGCATGCCAGAGTCTTCGTTCGTTATCGGAATTA 5797 Query 181 A-CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 | ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || Sbjct 5796 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAG 5737 Query 240 AAAGAGCTATCAATCTGTC 258 ||||||||||| ||||||| Sbjct 5736 AAAGAGCTATCGATCTGTC 5718 >seq365 Length=1785556 Score = 158 bits (174), Expect = 2e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||||||| |||||||||||||||||||||||| |||||||| Sbjct 260178 CTAGTTAGCATGCCAGAGTCTCGTTCATTATCGGAATTAACCAGACAAATCGCTCCACCA 260119 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 260118 ACTAAGAAAGGCCATGCACCACCACCCATGGAATTGAGAAAGAGCTATCAATCTGTC 260062 >seq1663 Length=334535 Score = 125 bits (138), Expect = 1e-26 Identities = 88/100 (88%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||||||||| |||||||||||||||||| ||||||||||| ||| ||||||| Sbjct 117019 GTCTTGTTCGTTATCAGAATTAACCAGACAAATCGCTCCACCAACT---AACAGCCATGC 117075 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| | |||| |||||| ||||||||||||||||||||| Sbjct 117076 ACCTCAACCCGCAGAATCCAGAAAGAGCTATCAATCTGTC 117115 >seq16198 Length=237580 Score = 107 bits (118), Expect = 3e-21 Identities = 177/241 (73%), Gaps = 17/241 (7%) Strand=Plus/Minus Query 35 GCCCAGAACATCTAAGGGC-ATCACAGACCTGTT-ATTGCCTCAAACTTCCATTGGCTGG 92 ||||||| ||||||||||| |||||||||||||| |||| || || || ||||| Sbjct 18322 GCCCAGACCATCTAAGGGCGATCACAGACCTGTTTATTGTTCCAGTCTCTGAT-GGCTGA 18264 Query 93 AAGCCAATAGTCCCTCTAAGAA----GCCAGCCACCAACCA--TAGTCG-ATGGGGCTAT 145 | |||| | ||||||||||||| | | ||| ||| | | | | | |||| Sbjct 18263 ACGCCACTTGTCCCTCTAAGAATTTTGGGGGACACTGACCGCTTGGGGGTACATGACTAT 18204 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA--TCACTCCACCAA- 202 ||||||| | |||| ||| |||||| || ||||||| ||||| | | |||||| Sbjct 18203 TTAGCAGCCACAAGTCTTGTT-GTTATCAGA-TTAACCA-ACAAAATTGGCCTCACCAAA 18147 Query 203 CTAAGAACGGCCATGC-ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTC 261 ||||||| ||||||| ||||| ||||| |||||||| || |||||||||||||| || Sbjct 18146 CTAAGAATTGCCATGCCACCACTACCCAGGGAATCAAGCAAAGGCTATCAATCTGTCATC 18087 Query 262 C 262 | Sbjct 18086 C 18086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796636689117