Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq20301 347 2e-93 seq10580 347 2e-93 seq18024 345 7e-93 seq17664 338 1e-90 seq6961 338 1e-90 seq2254 273 4e-71 seq7689 264 2e-68 seq16198 259 8e-67 seq1581 95.1 2e-17 seq1031 86.0 1e-14 seq8483 84.2 4e-14 >seq20301 Length=17530 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 4729 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 4670 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 4669 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 4610 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4609 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 4550 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 4549 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 4490 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 4489 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 4436 >seq10580 Length=26653 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 11102 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 11161 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 11162 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 11221 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 11222 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 11281 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 11282 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 11341 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 11342 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 11395 >seq18024 Length=276033 Score = 345 bits (382), Expect = 7e-93 Identities = 253/293 (86%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 273856 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 273797 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 273796 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 273737 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 273736 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 273677 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 273676 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 273617 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | || | |||||||| ||||| | |||||| ||| |||||| Sbjct 273616 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATT 273564 >seq17664 Length=22148 Score = 338 bits (374), Expect = 1e-90 Identities = 252/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 10331 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 10272 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 10271 ACGACGATCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 10212 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 10211 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAGGGATCAAAAAGCGACGTCGCTA 10152 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 10151 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 10092 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 10091 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 10038 >seq6961 Length=175213 Score = 338 bits (374), Expect = 1e-90 Identities = 253/294 (86%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 164912 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 164971 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 164972 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 165031 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 165032 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 165091 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||||||||||| |||||| |||||| || Sbjct 165092 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAAC-TTTCTGACACCTCCTGCT 165150 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 165151 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 165204 >seq2254 Length=1258136 Score = 273 bits (302), Expect = 4e-71 Identities = 204/235 (87%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||| ||||||||| ||||||| Sbjct 767045 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGATAAAACTAATCTGTCTC 767104 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | | |||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 767105 AC-ATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAATAATCCAACGCTTGGTG 767163 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | ||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||| Sbjct 767164 AGTTCTGCTTCACAATGATAGGAAGAGCCGACATGGAAGGATCAAAAAGCGACGTCCCTA 767223 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| |||||||||||||||| |||||||| ||||||||| |||||| Sbjct 767224 TGAACGCTTGGCCGCCACAAGCCAGTTATTCCTGTGGT-ACTTTTCTGACACCTC 767277 >seq7689 Length=65901 Score = 264 bits (292), Expect = 2e-68 Identities = 246/312 (79%), Gaps = 19/312 (6%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 63773 TACTGAGCAGGATTACCATGGAAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 63832 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 63833 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 63892 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA----GGATCAAAAAG-----CA 170 ||||||||||| |||||||||||||||||||||||| | || ||| | || Sbjct 63893 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAATCTTGTTCCAAAGGACTCCCA 63952 Query 171 ---------ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 | ||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct 63953 ATCTGGGAGATTTCGCTATGAACGCTTGGACGCCACAAGCCAGTTATCGCTGTGGTATCT 64012 Query 222 TTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 |||||| |||||| || | ||| | || | |||||||| ||||| | |||||| Sbjct 64013 TTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCA 64072 Query 282 TGGTTTGTATTC 293 ||| ||||||| Sbjct 64073 CGGTCTGTATTC 64084 >seq16198 Length=237580 Score = 259 bits (286), Expect = 8e-67 Identities = 215/263 (82%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 22620 TCATCAGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACTTTCCCTA 22561 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| |||| ||||||| ||| |||||||||||| |||||||||||||| || Sbjct 22560 TTAGTGGATGAATAATCCAATTCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 22501 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | | ||||||||||||||| | || ||||||| ||||| | ||||||||||||||||| Sbjct 22500 CGTTGAAGGATCAAAAAGCGATGTTGCTATGAGTGCTTGACCACCACAAGCCAGTTATCC 22441 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||| ||||| |||||| |||||| || | | | | || | |||||| | ||| Sbjct 22440 CTGTAGTAACCTTTCTGACACCTCCTGCTTAAGACCCAAAAGGTCAGAAGGATAGTGAGG 22381 Query 271 CCACACTTTCATGGTTTGTATTC 293 | |||||||| ||| ||||||| Sbjct 22380 TCCCACTTTCACGGTCTGTATTC 22358 >seq1581 Length=285223 Score = 95.1 bits (104), Expect = 2e-17 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||||| ||| ||||||||||||||| || ||| |||||||| | ||| ||||| | Sbjct 166851 AAGAGCCAACACCGAAGGATCAAAAAGTAATGTCACTATGAACACCGGGCCACCACAGGT 166792 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 || |||||| || ||||||||||||| ||||| Sbjct 166791 CAATTATCCTTGAGGTAACTTTTCTGACACCT 166760 >seq1031 Length=584026 Score = 86.0 bits (94), Expect = 1e-14 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT--CCCTGTG 215 |||| |||||| | ||| || |||| |||||||| |||||||| |||||| ||||||| Sbjct 561015 GGATAAAAAAGTGATGTCTCTGTGAATGCTTGGCTACCACAAGCTAGTTATATCCCTGTG 560956 Query 216 GTAACTTTTCTGGCACCTC 234 |||||||||||| |||||| Sbjct 560955 GTAACTTTTCTGACACCTC 560937 >seq8483 Length=48609 Score = 84.2 bits (92), Expect = 4e-14 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| |||||| ||| | | || ||||||||||||||||||||||||||||| Sbjct 26220 TACTGAGCAGAATTATCATGGCAACAACACCTCATCAGTAGGGTAAAACTAACCTGTCTC 26161 Query 60 ATGACGGTCTAAACCCAGCTCACGTT 85 |||| |||||||||||||||| || Sbjct 26160 ATGATATTCTAAACCCAGCTCACATT 26135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854219234592