Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq18024 91.5 9e-17 seq6961 91.5 9e-17 seq10808 80.6 2e-13 seq20442 75.2 7e-12 >seq18024 Length=276033 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 266005 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 265948 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 265947 TAAT-CAACGCAAGCT 265933 >seq6961 Length=175213 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 172687 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 172744 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 172745 TAAT-CAACGCAAGCT 172759 >seq10808 Length=7174 Score = 80.6 bits (88), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 4/75 (5%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTAC-AAAGGGCAGGGAC 107 |||||||| |||| || ||||||||| ||||||||||| |||||| ||||||||||||| Sbjct 1814 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAAGGGCAGGGAC 1757 Query 108 GTAATACAACGCAAG 122 |||| ||||||||| Sbjct 1756 TTAAT-CAACGCAAG 1743 >seq20442 Length=10053 Score = 75.2 bits (82), Expect = 7e-12 Identities = 65/76 (86%), Gaps = 5/76 (7%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | | || ||||||||| ||||||||||| |||||||||||||| |||| Sbjct 6165 CTCACTAAACA--TCCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCA-GGACT 6110 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 6109 TAAT-CAACGCAAGCT 6095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300740337260