Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq18024 199 7e-49 seq6961 194 3e-47 seq20442 174 3e-41 seq10808 149 1e-33 >seq18024 Length=276033 Score = 199 bits (220), Expect = 7e-49 Identities = 206/266 (77%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACA 122 ||| || |||||||||||||| | ||| | |||| || | ||||| |||||||| Sbjct 265701 GTCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACA 265758 Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 |||||||||||||||||||||| | |||| ||||||||||||||||||| | || || Sbjct 265759 GGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGT 265818 Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 || | | ||| ||||| ||| |||||| | | || | | ||||| ||||||| Sbjct 265819 GTGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATC 265878 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 | | |||||||||||| | | | |||||||||| || |||||| ||| ||||| ||| | Sbjct 265879 GGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTG 265938 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| |||||||||||||||| Sbjct 265939 CGTTGATTAAGTCCCTGCCCTTTGTA 265964 >seq6961 Length=175213 Score = 194 bits (214), Expect = 3e-47 Identities = 201/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 172982 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 172925 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 172924 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 172865 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 172864 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 172805 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 172804 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCG-GTCATAAGCTTGCGTTGATT 172746 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 172745 AAGTCCCTGCCCTTTGTA 172728 >seq20442 Length=10053 Score = 174 bits (192), Expect = 3e-41 Identities = 199/260 (77%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | | | |||| | || ||||| ||||||||||||||||| Sbjct 5871 CTTCTTAGAGGGACAAGTGCGTTCAGCCACCG--AGATTGAG-CAATAACAGGTCTGTGA 5927 Query 132 TGCCCTTAGATGTTCTGGGCCGCA-CGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||| | |||| ||| |||||||||||||||| | || || | | | Sbjct 5928 TGCCCTTAGATGTCCGGGGCTGCATCGCGCGCTACACTGACTGGCTCAGCGT-TGCCTAC 5986 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG--TCGTGCTGGGGATAGAGCAT 248 ||| ||||| ||| |||||| | ||| ||| | ||||| ||||||| | | || Sbjct 5987 CCTACGCCGGCAGGCGCGGGTAAACCCGTTGAACCCCCATTCGTGATGGGGATCGGGGAT 6046 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||| Sbjct 6047 TGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGA 6106 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| || ||||||||||||| Sbjct 6107 TTAAGT-CCTGCCCTTTGTA 6125 >seq10808 Length=7174 Score = 149 bits (164), Expect = 1e-33 Identities = 197/264 (75%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| | ||||||||||||| Sbjct 1507 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAGCAATTAACAGGTCTGTG 1565 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||| ||||||||||||||| | || || || | | Sbjct 1566 ATGCCCTTAGATGTCCGGGGCTGCAAGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 1625 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC-TGTCGT-GCTGGGGATAGAGCAT 248 ||| ||||| ||| |||||| | || ||| | | ||| | ||||||| | | || Sbjct 1626 CCTACGCCGGCAGGCGCGGGTAACCCGTTTGAACCCATTGCGTGGATGGGGATCGGGGAT 1685 Query 249 TGC-AATTATTGCTCT---TCAACGAGGAATGCCTAGTAAGCG-CGTGTCATCAGCAC-- 301 ||| ||||||| ||| | |||||||||| | |||||| | || ||||| ||| | Sbjct 1686 TGCTAATTATTTATCTCCATGAACGAGGAATTTCCAGTAAGTGCCGGGTCATAAGCCCTT 1745 Query 302 GCGTTGATTACGTCCCTGCCCTTT 325 |||||||||| ||||||||||||| Sbjct 1746 GCGTTGATTAAGTCCCTGCCCTTT 1769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946999600896