Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq20301 104 4e-20 seq18024 104 4e-20 seq17664 104 4e-20 seq10580 104 4e-20 seq7689 104 4e-20 seq6961 104 4e-20 seq2254 91.5 2e-16 seq16198 82.4 1e-13 >seq20301 Length=17530 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 4727 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 4784 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 4785 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 4838 >seq18024 Length=276033 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 273854 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 273911 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 273912 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 273965 >seq17664 Length=22148 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 10329 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 10386 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 10387 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 10440 >seq10580 Length=26653 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 11104 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 11047 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 11046 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 10993 >seq7689 Length=65901 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 63775 GTACGAGAGGAACCGCAGG-TTCAGACTT-TTGGTGTATGTGCTTGGCTGAGGAGCCAAT 63718 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 63717 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 63664 >seq6961 Length=175213 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 164914 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 164857 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 164856 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 164803 >seq2254 Length=1258136 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | || ||| | ||||| | || | || |||| || || | Sbjct 767047 GTAGGAGAGGAACCGCAGG-TTGAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 766990 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 766989 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 766936 >seq16198 Length=237580 Score = 82.4 bits (90), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| || | ||||||| || |||||| | ||||| | || | || |||| || || | Sbjct 22649 GTATGACAAGAACCGCAGA-TTCAGAG-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 22706 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | | |||||||||||||| |||||||| |||||||| |||||| |||||||| |||| Sbjct 22707 GGAGTGAAGCTACCATCTGTGGGATTATGACTGAACGCATCTAAGACAGAATCC-TGCC 22764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819032098048