Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq18024 376 8e-102 seq20443 324 4e-86 seq20442 221 4e-55 seq6961 192 2e-46 seq16198 176 1e-41 seq16914 113 1e-22 seq2269 82.4 2e-13 seq575 77.0 1e-11 >seq18024 Length=276033 Score = 376 bits (416), Expect = 8e-102 Identities = 421/560 (75%), Gaps = 62/560 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 264837 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 264778 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 264777 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 264718 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 264717 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 264658 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 264657 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 264598 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCA-AGGAGC-----CCCGAA-- 290 || | |||||| | | ||||| || |||||| || || |||| | Sbjct 264597 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAGAGCCGCCGGCGCCCGCACC 264538 Query 291 ---------GGGC-------------------GTTGGTTTTTTATCTAATAAATACA--- 319 |||| ||||| |||| |||| |||||| || Sbjct 264537 CCCCGGCCGGGGCCGGGGAGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGC 264479 Query 320 ---CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCAC 369 |||| ||||| ||||| | |||||||||||||||||||||||||| Sbjct 264478 ATCCCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCAC 264421 Query 370 GGTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 |||||||| |||| | || | | | |||| ||| |||||||||||||||||||| Sbjct 264420 AGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCA 264361 Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||||||||||||||||| | | |||||||||||||||||||||||||||||||| Sbjct 264360 TTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGAC 264301 Query 485 AAGCATATGACTACTGGCAG 504 ||||||||| |||||||||| Sbjct 264300 AAGCATATG-CTACTGGCAG 264282 >seq20443 Length=15419 Score = 324 bits (358), Expect = 4e-86 Identities = 414/561 (74%), Gaps = 71/561 (13%) Strand=Plus/Minus Query 3 ACTCATTCCAA--TTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTAC- 58 ||||||||||| ||||| | || | |||||| ||||||| ||||| | |||||||| Sbjct 15257 ACTCATTCCAAAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACG 15198 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 15197 CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 15138 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 |||||||||||||||||||||||||||||||| ||| ||||| |||||| |||||| Sbjct 15137 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATT-CCCGTCACCCGT---GTCCATGG 15082 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 | ||| |||||||||||||||||||||| || || ||||| | |||||| Sbjct 15081 T-GGCACGGCGACTACCATCGAAAGTTGATAGGG--GACGTTCGAATG-GTCGTCGCCGC 15026 Query 239 CTC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGC-----CCCGAA 290 | | || | |||||| | | ||||| || |||||| | || |||| | Sbjct 15025 CACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAGAGCGCCGGCGCCCGCA 14966 Query 291 -----------GGGC-------------------GTTGGTTTTTTATCTAATAAATACAC 320 |||| ||||| |||| |||| |||||| ||| Sbjct 14965 CCCCCCGGCCGGGGCCGGGGAGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCAC 14907 Query 321 CCCTTC------CGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACC 367 | ||| ||||| ||||| | |||||||||||||||||||||||| Sbjct 14906 GCATTCCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACC 14849 Query 368 ACGGTTATCCATGTAGTA-AGGTACTA---TCAAATAAACGATAACTGATTTAATGAGCC 423 || |||||||| |||| | ||| | | | || ||| ||||||||||||||||||| Sbjct 14848 ACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAGGAACCATAACTGATTTAATGAGCC 14789 Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 |||||||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 14788 ATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGA 14729 Query 484 CAAGCATATGACTACTGGCAG 504 |||||||||| |||||||||| Sbjct 14728 CAAGCATATG-CTACTGGCAG 14709 >seq20442 Length=10053 Score = 221 bits (244), Expect = 4e-55 Identities = 408/580 (70%), Gaps = 89/580 (15%) Strand=Plus/Minus Query 3 ACTCATTCCAATTA--CAAGACC-CAAAAGAGCCCTGTATCAGTATTTATT-----GTCA 54 |||| ||||||||| || | || | |||||| ||||||| | |||||| |||| Sbjct 4857 ACTCCTTCCAATTAAGCAGGGCCTCGAAAGAGTCCTGTAT---TGTTTATTTTTGCGTCA 4801 Query 55 CTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA-TGTGGT 113 |||| |||||| ||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 4800 CTAC-TCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTTGATTGTGGT 4742 Query 114 AG-CCGTTTCTCAGGCT-CCCTCTCCGGAATC-GAACCCTAATTCCCCGTTACCCGTTGA 170 || |||||||||||||| |||||||| ||||| ||||||| ||||||||| |||| || Sbjct 4741 AGCCCGTTTCTCAGGCTCCCCTCTCC-GAATCTGAACCCTGATTCCCCGTCACCCCGTGG 4683 Query 171 TACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACC 230 | | |||||||| ||||||||||||||||||| |||||| || ||||| | Sbjct 4682 TCACCTGGTAGGCACGGCGACTACCATCGAAAGTTGATA-GGCAGACGTTCGAATGGGTC 4624 Query 231 ATCGCCGGCTC----AAGGCCATGCGATTCGTT------AAGT-TATTATGAATCACCA- 278 |||||| | | || | ||||||||||| | || ||| || ||||| Sbjct 4623 GTCGCCGCCACTGGGGTGGGCGTGCGATTCGTTGCCCCGAGGTGTATCTAGAGCCACCAG 4564 Query 279 AGGAGC------CCCGAA------------------------------GGGCGTTGGTTT 302 || || |||| | ||| ||||||| Sbjct 4563 AGCCGCCCGGCGCCCGCAACGCCCCGGCCGGGCCGGGGAGGGACTACCGGGGTTTGGTTT 4504 Query 303 TTTATCTAATAAATACAC-CCCTTCCGAAGTCGGGGT-----TTTTAGC-ATGTA--TTA 353 | |||| |||| || | || ||||| ||||| | || ||||| ||| Sbjct 4503 TGAATCTGATAATCACGCATCCCCGCGAAG--GGGGTCAGCGCGTCGGCAATGTAATTTA 4446 Query 354 GC-TCTAGAATTACCACGGTTAT-CCATGTAGTAAGGTA------CTATCAAATAAACGA 405 || ||||||||| |||| ||||| ||| |||| || | | | | |||| ||| | Sbjct 4445 GCTTCTAGAATT-CCACAGTTATGCCAAGTAGGAAAGGACGCGAGCGACCAAAGGAACCA 4387 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 |||||||||||||||||||||||||||||||||| | | ||||||||||||| Sbjct 4386 CTACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGC 4327 Query 466 ATGGCTTAATCTTTGAGACAAGCA-TATGACTACTGGCAG 504 ||||||||||||||||||| |||| |||| |||||||||| Sbjct 4326 ATGGCTTAATCTTTGAGAC-AGCATTATG-CTACTGGCAG 4289 >seq6961 Length=175213 Score = 192 bits (212), Expect = 2e-46 Identities = 192/234 (82%), Gaps = 15/234 (6%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAA--GACCCAAAAGAGCCCT-GTA-TCAGTATTTATTGTCACTAC 58 |||||||||| |||||| | | | ||||| ||| ||| | || || | |||||||| Sbjct 173852 ACTCATTCCA-TTACAACGGGCTCGCAAGAGTCCTTGTAATTGGTTATTTTCGTCACTAC 173910 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||| ||||| Sbjct 173911 CTCCCCGGGTCGGGAGTGGGTAATT-GCGCGCCTGCTGCCTTCCTTGGAGGTGGGAGCCG 173969 Query 119 -TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||| |||||||||||||||||||||||| ||||||||| ||||| | ||||| Sbjct 173970 TTTTCTCA-GCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGGGGTCACCAT- 174027 Query 178 GTAGGCCACTATC--CTACCATCGAAAGTTGA-TAGGGC--AGAAATTTGAATG 226 ||||| ||| | ||||||||||||||||| |||||| || ||| ||||| Sbjct 174028 GTAGG-CACGGCCGACTACCATCGAAAGTTGATTAGGGCGATGACATTCGAATG 174080 >seq16198 Length=237580 Score = 176 bits (194), Expect = 1e-41 Identities = 186/239 (78%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 3 ACTCATTC--CAATTACAAGACCCAAAAGAG-CCCTGTATCAGTATTTATTGTCACTACC 59 ||||||| |||||||| | || ||||| |||||||| ||||| || ||||| || Sbjct 15294 ACTCATTGTGCAATTACAGGGCCTCGAAGAGTCCCTGTATTGTTATTTTTTATCACT-CC 15236 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC-TTGGATGTGGTAGCCG 118 |||| | | ||||| ||| | |||| || | ||||||| ||| |||||||||||||| | Sbjct 15235 TCCCAG-GCCGGGAGTGGTAACTTTGTGCACGTGCTGCCCTCCCTTGGATGTGGTAGCTG 15177 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||| |||||||||| |||| |||| || |||||| || |||| | | ||||||| Sbjct 15176 TTTCTCAATCTCCCTCTCCAGAATTGAACGCTGATTCCCTGTCACCCTTGGTCACCATGG 15117 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||||| | |||||||||||| ||||||||||||| ||| ||||| ||| |||| Sbjct 15116 TAGGCAAGGTGACTACCATCGAAAATTGATAGGGCAGACATTCGAATGGGTCATTGCCG 15058 Score = 158 bits (174), Expect = 4e-36 Identities = 130/160 (81%), Gaps = 19/160 (12%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||||||||||||||||||||| || ||||||| |||| ||| Sbjct 14893 GCATGTATTAGCTCTAGAATTACTACAATTATCCA------AAGG------------AAC 14852 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 |||||||||||||| |||||||||||||||||||||| || || |||||||||||| Sbjct 14851 CATAACTGATTTAATAAGCCATTCGCAGTTTCACTGTACCGACTGTGCATACTTAGACAT 14792 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||||||| ||||||||| Sbjct 14791 GCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCA 14753 >seq16914 Length=303443 Score = 113 bits (124), Expect = 1e-22 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTG-TCACTACCTCCCC 64 ||||| ||||||| || || || ||| || ||||| || || |||||||||| Sbjct 33324 CATTCTAATTACAGTGCCTTGAAAAGTCCTAGATTGATATTTTTTCATCGCTACCTCCCC 33265 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 || ||| | ||||||||| | ||||||| ||||||| || || |||| ||||||| Sbjct 33264 AGGTTGGG--TAGGTAATTTGTACACCTGCTGACTTCCTTAGACATGATAGCTGTTTCTC 33207 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 || |||||| || |||| || |||| ||||| || ||| || | |||| ||||||| Sbjct 33206 AGACTCCCTACCCAGAATTGAGCCCTTATTCCTTGTCACCTGTGGTCACCAAGGTAGGCA 33147 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAG 215 | |||| || ||||||||||| |||| Sbjct 33146 TGGAGACTACAATTTAAAGTTGATAGAGCAG 33116 >seq2269 Length=1023230 Score = 82.4 bits (90), Expect = 2e-13 Identities = 121/163 (74%), Gaps = 14/163 (9%) Strand=Plus/Minus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-----ATCAAATAAAC 403 || |||||||||||||| || ||||| ||||||| | | | | | || | || Sbjct 537326 TACTAGCTCTAGAATTATCA--GTTATGCATGTAGGAGAGGAGTGAGCAACCACAGGAAT 537269 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT--ATACTTAGAC 461 ||| ||| ||||||||||||| |||| | |||||| | ||| ||| |||||||||| Sbjct 537268 CATAGTTGACTTAATGAGCCATTTGCAGCT-CACTGT-TCCATT-CTTGCATACTTAGAC 537212 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | |||||||||| ||||| ||| | |||| || ||||||| Sbjct 537211 ACGAATGGCTTAATTTTTGA-ACACACGTATG-CTCCTGGCAG 537171 >seq575 Length=76696 Score = 77.0 bits (84), Expect = 1e-11 Identities = 78/97 (80%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAATAAACGA-- 405 ||||||||||||||||||||| ||| |||| |||| | ||| | ||| ||| || Sbjct 74653 TATTAGCTCTAGAATTACCACAGTT-TCCAAGTAGGAGAGGATCGGGCAACCAAAGGAAC 74595 Query 406 -TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 |||||||||||||||||| || | |||||||||||| Sbjct 74594 GTAACTGATTTAATGAGCCGTTTG-AGTTTCACTGTA 74559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510080444672