Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15962 250 2e-61 seq15872 239 4e-58 seq3369 217 1e-51 seq606 102 6e-17 seq2406 89.7 4e-13 seq2418 87.8 1e-12 >seq15962 Length=33107 Score = 250 bits (276), Expect = 2e-61 Identities = 577/850 (68%), Gaps = 32/850 (4%) Strand=Plus/Minus Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 ||||| || |||||||||||||| | |||||||| ||| | ||||| ||||| | || Sbjct 16079 AAGGCCGAGGCTTCCTTCTGGACAGCTGAGGAGGTGGATCTTTCCAAGGACATCCAGCAC 16020 Query 61165 TGGGAGC-GTTTATCGAGC-GGTGAACA-ACATTTCATTAAACATGTGTTGGCGTTCTTT 61221 || |||| ||| | ||| || | | | | | ||||| ||||| | || |||||| Sbjct 16019 TGAGAGCTGTTGA---AGCCGGAGGAGAGATACTTCATATCTCATGTTCTCGCTTTCTTT 15963 Query 61222 GCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCA 61280 || ||| || || || || ||||| ||||| |||| || ||| || || || ||||| Sbjct 15962 GCAGCTAGTGATGGCATAGTGAATGAAAATTTGGTGGAGCGATTTAGC-CAAGAAGTGCA 15904 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340 | | | || || || |||||||| |||||||| ||||||||||| || | || || || Sbjct 15903 AATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGA 15844 Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTT 61400 ||||||||| | || || || || ||||| | || | ||| | ||| | || Sbjct 15843 AATGTACAGTCTCCTTATTGACACTTACATTAAAGATCCCAAAGAAAGGGAATTTCTCTT 15784 Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGAT 61460 ||||||||| | || || || |||||| ||| || || |||||||| |||||| Sbjct 15783 CAATGCCATTTAAACAATGCCTTGTGTGAAGAAGAAGGCAGACTGGGCCTTGCGTTGGAT 15724 Query 61461 CACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 | |||| ||| || | ||| ||| ||| ||||| | | || || Sbjct 15723 --TGGGGACAAAGAGGCCACCTATGGAGAA-------AGGCCTTTGCCGCCTTGGAAGGA 15673 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 | || || ||| || ||||| |||| || ||| | |||||||| ||||| ||||| Sbjct 15672 ATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAAACGAGGACTAATGCCA 15613 Query 61579 GGTCTGACCTTCAGCAATGAG-TTGATATCACGCGACGAGGGCATGCATTGTGA-TTTTG 61636 || || || || ||||||| || || || | || |||||| | || ||||| |||| Sbjct 15612 GGGCTCACGTTTTCCAATGAGCTTATTAGCA-GGGATGAGGGCTTACACTGTGACTTTTC 15554 Query 61637 CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGA 61696 ||| || | ||||||| | ||| | || |||| |||| || | || || | Sbjct 15553 CTG-CCTGATGTTCAAAC---ACCTGTTACATAAACCGTGGGAGCAGAGAGTAAAAGAAA 15498 Query 61697 TTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCAC 61756 | || | || || | || |||||||| | || | || || |||||||| | Sbjct 15497 TAATTATCAATGCTGTTAGGATTGAACAGGAGTCCCTCCCGGAGGCCTTGCCCGTGAAGC 15438 Query 61757 TCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGT 61816 | || ||||||||||| ||||| |||||| ||||| ||||| || ||| | || Sbjct 15437 TTATTGGCATGAATTGCACTTTAATGAAGCAGTACATTGAGTTTGTGGCAGACAGGCTTA 15378 Query 61817 TGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTCATGG 61873 || | || ||||| | ||| || | | | | || | || |||||||| ||||||| Sbjct 15377 TGCTGGAGCTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGACTTCATGG 15321 Query 61874 ACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAAC 61933 | | ||||| ||||| || ||||| || || || ||||| | |||||||| ||||| | Sbjct 15320 AGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGC 15261 Query 61934 GTTTGGGTGT 61943 | |||| || Sbjct 15260 GGATGGGAGT 15251 >seq15872 Length=96178 Score = 239 bits (264), Expect = 4e-58 Identities = 568/843 (67%), Gaps = 18/843 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 || || || ||||| || |||||||||||||| | |||||||| ||| | ||||| ||| Sbjct 40768 ATATATAAGAAGGCCGAGGCTTCCTTCTGGACAGCTGAGGAGGTGGATCTTTCCAAGGAC 40709 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGC-GGTGAACA-ACATTTCATTAAACATGTGTTGG 61213 || | ||||||||| | | ||| || | | | | | ||||| ||||| | | Sbjct 40708 ATCCAGCACTGGGAGC--TGCTGAAGCCGGAGGAGAGATACTTCATATCTCATGTTCTTG 40651 Query 61214 CGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAG 61272 | |||||||| || || || || || ||||| ||||| |||| || ||| || || Sbjct 40650 CTTTCTTTGCAGCCAGTGATGGCATAGTGAATGAAAATTTGGTGGAGCGATTTAGC-CAA 40592 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || |||||| | | || || | |||||||| || || || ||||||||||| || || Sbjct 40591 GAAGTGCAAATTACAGAAGCCCACTGTTTCTATGGATTACAAATTGCCATGGAAAACGTA 40532 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 || || || ||||||||| | || || || || ||||| | || | ||| | ||| Sbjct 40531 CATTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGATCCCAAAGAAAGGGAA 40472 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 || ||||||||||| | || || | |||||| ||| || || |||||||| Sbjct 40471 TTTTTCTTCAATGCCATTTAAACAATGTCTTGTGTGAAGAAGAAGGCAGACTGGGCCTTG 40412 Query 61453 AATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGG 61510 |||||| | |||| ||| || | ||| ||| | | | || ||||| | | Sbjct 40411 CGTTGGAT--TGGGGACAAAGAGGCCACCTATGGAGAAAGGCTAC-AGCCTTTGCCGCTG 40355 Query 61511 TCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 | || | | || || ||| || ||||| |||| || ||| | |||||||| |||| Sbjct 40354 TGGAAGAAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAAACGAGGAC 40295 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAG-TTGATATCACGCGACGAGGGCATGCATTGT 61629 | ||||| || || || || ||||||| || || || | | |||||| | || ||| Sbjct 40294 TGATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCA-GGGGTGAGGGCTTACACTGT 40236 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689 || ||||| || | ||||||| | ||| | || |||| |||| || | || Sbjct 40235 GACTTTGCCTGCCTGATGTTCAAAC---ACCTGCTACATAAACCGTTGGAGCAGAGAGTA 40179 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 || | || | || || | || |||||||| || || || || || ||||| Sbjct 40178 AAAGAAGTAATTATCAATGCTGTTAGGATTGAACAGGAGTTCCTCACGGAGGCCTTGCCA 40119 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 || || || ||||||||||| ||||| |||||| ||||| ||||| || ||| Sbjct 40118 GTGAAGCTTATTGGCATGAATTGCACTTTAATGAAGCAGTACATTGAGTTTGTGGCAGAC 40059 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGA-AAAACCCATTTGATTT 61868 | || || | || ||||| | ||| || | | | | | || |||||||| || Sbjct 40058 AGGCTTATGCTGGAGCTGGGT-TTTAGCAAGGCTTTCAGAGTAGAGAATCCATTTGACTT 40000 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 |||||| | ||||| ||||| || ||||| || || || ||||| | |||||||| || Sbjct 39999 CATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTA 39940 Query 61929 TCA 61931 ||| Sbjct 39939 TCA 39937 >seq3369 Length=196643 Score = 217 bits (240), Expect = 1e-51 Identities = 616/928 (66%), Gaps = 24/928 (3%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || ||||| || || | || || |||||| || | | Sbjct 91302 ATGAACCACTCCTGAGAGAAAAGCCCCGTCGCTTTGTCATCTTTCCTATCGAGGATCACG 91361 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| ||||| || ||||| || |||||| ||||||| | |||||||| ||| Sbjct 91362 ATATCTGGCAGATGTATAAGAAGGCCGAGGCTTCCCTCTGGACAGCTGAGGAGGTGGATC 91421 Query 61145 TGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGC-GGTGAACA-ACATTTCATTAA 61202 | ||||| ||||| | | ||||| | | ||| || | | | | | ||||| Sbjct 91422 TTTCCAAGGACATCCAGCCCCGGGAGG--TGCTGAAGCCGGAGGAGAGATACTTCATAGC 91479 Query 61203 ACATGTGTTGGCG--TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260 ||| ||| || |||||||| || || || | || ||||| |||| |||| Sbjct 91480 TCATCCGTTCTCGCTTTCTTTGCAGCCAGTGATGGCCTAGTGAATGAAAATTGGGTGGAG 91539 Query 61261 CG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGC 61319 || ||| || || || |||||| | | || | || ||||||| |||||||| ||||| Sbjct 91540 CGATTTAGC-CAAGAAGTGCAAATTACAGAAGTCCGCTGTTTCTGTGGCTTCCAAATTGC 91598 Query 61320 CATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCG 61379 |||||| || | || || || ||||||||| | || || || || ||||| | || | Sbjct 91599 CATGGAAAACATACATTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGATCC 91658 Query 61380 GGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGC 61439 ||| | ||| | ||||||||||| ||||| || || |||||| ||| || Sbjct 91659 CAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACAATGCCTTGTGTGAAGAAGAAGGC 91718 Query 61440 GGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGC 61499 ||||||||||| |||||| | | || ||| || | ||| ||||| | | || Sbjct 91719 AGATTGGGCCTTGCGTTGGATTGGGGGCA-AAGGGCCACCTATGGAGAACGTGTTGTAGC 91777 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | | || || | || || || || ||||| |||| || ||| | || Sbjct 91778 CTTTGCCGCCCTGGAAGGACTCTTCTTTTCCGGTTCTTTTGCGTCAATATTCTGGCTCAA 91837 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG-TTGATATCACGCGACGAGG 61618 |||||| |||| ||||| || || || || ||||||| || ||||| | || |||| Sbjct 91838 GAAACGAAGACTGATGCCAGGGCTTACGTTTTCCAATGAGCTTATTATCA-GAGATGAGG 91896 Query 61619 GCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG 61678 | | || ||||| ||||| || | |||| || | ||| | || |||||| Sbjct 91897 GTTTACACTGTGACTTTGCCTGCCTGATGTTCAGAC---ACCTGCTCCAT-AAACGTCGG 91952 Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738 || || | || || | || | || || | || |||||||| | || || | Sbjct 91953 AGCAGAGAGTAAAAGAAGTAATTATCAATGCTGTTAGGATGGAACAGGAGCTCCTCACGG 92012 Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798 | || ||||| || | || | |||||| || ||||| |||||| ||||| | Sbjct 92013 AGGCCTTGCCAGTGAAGTTTATTGACATGAACTGCACTTTAATGAAGCAGTACATTGAGT 92072 Query 61799 TTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAA 61855 |||| || ||| | || || | || ||||| | ||| || | | | | || | | Sbjct 92073 TTGTGGCAGACAGGCTTATGCTGGAGCTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGA 92129 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 | |||||||| |||||||| | ||||| ||||| || ||||| || || || ||| Sbjct 92130 ATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTAAGA--- 92186 Query 61916 GTGTAGGCGACTATCAACGTTTGGGTGT 61943 | ||||| || | ||| || |||| || Sbjct 92187 GAGTAGGTGAGTGTCAGCGGATGGGAGT 92214 >seq606 Length=273764 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| ||||| || || ||||| || || |||| || || || Sbjct 40632 GGTATACTCTACTATTTCTGTGCATAGGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTG 40691 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| |||||||| | ||| ||||| | |||||| || || || ||||| || Sbjct 40692 GTTGCTCTTCCGATTGCAGGAATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTG 40751 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 40752 AGACTCAATGATGGCATACCAAAG 40775 >seq2406 Length=770489 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 389229 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 389288 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| || ||||| ||| | || || ||||| || ||||| || Sbjct 389289 GTTCACTCAGAAATGTATAGTTTGCTAATAGATACTTATATCAGAGA 389335 >seq2418 Length=977819 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || ||| || || ||||| || || | || || ||||||||| | ||| Sbjct 182569 GAACCACTGCTGAGAGAAAACCCCCGTCGCTTTGTCATCTTTCCTATCGAGTATCACGAT 182510 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| |||||||| ||||| || |||||||||||||| | |||||||| Sbjct 182509 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCTGAGGAGGT 182457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397465486718480