Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq3077 174 3e-41
seq486 174 3e-41
seq919 170 4e-40
seq47 141 2e-31
seq23 138 2e-30
seq778 118 2e-24
>seq3077
Length=3232
Score = 174 bits (192), Expect = 3e-41
Identities = 208/278 (75%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 3092 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3033
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 3032 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 2974
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| ||||| | |||||| |
Sbjct 2973 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 2914
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 2913 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 2854
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 2853 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 2817
>seq486
Length=117882
Score = 174 bits (192), Expect = 3e-41
Identities = 208/278 (75%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 3149 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3090
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 3089 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 3031
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| ||||| | |||||| |
Sbjct 3030 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 2971
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 2970 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 2911
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 2910 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 2874
>seq919
Length=34509
Score = 170 bits (188), Expect = 4e-40
Identities = 208/278 (75%), Gaps = 7/278 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 10993 ATGCTCTTAGCTGAGTGTCCCGCGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 10935
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 10934 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 10876
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| ||||| | |||||| |
Sbjct 10875 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 10816
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 10815 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 10756
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 10755 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 10719
>seq47
Length=2572594
Score = 141 bits (156), Expect = 2e-31
Identities = 198/268 (74%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 49 CTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 107
||| |||| ||| | ||||| | | ||||||||||||||| | |||||||||||||||
Sbjct 486335 CTGAGTGTCCCGCGTGGCCAGAAGCCTTTACTTTGAAAAAAATT-AGTGTTCAAAGCAGG 486393
Query 108 CCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164
|| || ||||| || |||||||| ||||||||| |||||||||||||||
Sbjct 486394 CCCGAGCCACCTGAATAGGCG-GCTAGGAATAATGGAATAGGAC-TGCGGTTCTATTTTG 486451
Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224
||||||| | || | | |||||||| |||||| | |||||| | |||||
Sbjct 486452 TTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGATGG-CGGGGGCATTCGTATTGTGCC 486510
Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284
| |||| ||||||||||||| | |||||| || | | |||||| || |||||
Sbjct 486511 GCTAGAG-TGAAATTCTTGGACCCCTGCAAGACTGACCAAAGTGAAAGCATTTGCCAAGA 486569
Query 285 ATGTTTTCATTAATCAGTGAACGAAAGT 312
|||||||||||||||| ||| ||||||
Sbjct 486570 ATGTTTTCATTAATCA-AGAATGAAAGT 486596
>seq23
Length=50764286
Score = 138 bits (152), Expect = 2e-30
Identities = 205/284 (72%), Gaps = 9/284 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| || |||||| | | | ||||||||||||||||||| | |
Sbjct 14201245 ATGCTCTTAGCTGAGTGTCCCACGGAGCCCGAAGCGTTTACTTTGAAAAAATTAG--TAT 14201188
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||| ||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 14201187 TCATAGCAGGCGCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 14201129
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | | | || |||||||| ||| || ||||||| |
Sbjct 14201128 TTCTATTTTGTTGGTTTTCGGAATTGAGGTCATGATTAAGAGG-ATGACCGGGGGTATTC 14201070
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| | ||||| || | | | ||||
Sbjct 14201069 GTATTGCGCCTTTAGAGGTGAAATTCTTGGACCTGCGCAAGACAGACCAAAGGGGAAGCA 14201010
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|| ||||| |||||||||||||||| ||| |||||| || ||
Sbjct 14201009 TTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTCAGAGG 14200967
>seq778
Length=60969063
Score = 118 bits (130), Expect = 2e-24
Identities = 175/242 (72%), Gaps = 7/242 (3%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAGCAT 130
|||||||||||| ||||||||||| |||||||||||| || | |||| |||
Sbjct 42982276 TTTACTTTGAAACAATTAGAGTGTCCAAAGCAGGCCTGAGCCGCCTGGATACTGCAGCTA 42982335
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|||||||| ||||||||| ||| |||||||||||||||||| | | || | | ||| |
Sbjct 42982336 GGAATAATGGAATAGGAC-TGCTGTTCTATTTTGTTGGTTTTTGGAACTGAGGCCATGGT 42982394
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| | |||| || ||| | || ||||| ||||||||||||
Sbjct 42982395 TAAGAGGGAGGGCCGGGTCATTC-GTAAGC-GCTGCTAGAGGAGAAATTCTTGGACCAGC 42982452
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| || | | |||| | | || || |||||||||||||||| ||| ||||
Sbjct 42982453 GCAAGACGGACCAGAGTGAAACCATCTGCCGAGAATGTTTTCATTAATCA-AGAATGAAA 42982511
Query 311 GT 312
||
Sbjct 42982512 GT 42982513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915171345088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |