Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3077 174 3e-41 seq486 174 3e-41 seq919 170 4e-40 seq47 141 2e-31 seq23 138 2e-30 seq778 118 2e-24 >seq3077 Length=3232 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 3092 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3033 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 3032 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 2974 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 2973 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 2914 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 2913 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 2854 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 2853 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 2817 >seq486 Length=117882 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 3149 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3090 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 3089 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 3031 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 3030 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 2971 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 2970 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 2911 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 2910 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 2874 >seq919 Length=34509 Score = 170 bits (188), Expect = 4e-40 Identities = 208/278 (75%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 10993 ATGCTCTTAGCTGAGTGTCCCGCGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 10935 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 10934 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 10876 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 10875 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 10816 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 10815 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 10756 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 10755 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 10719 >seq47 Length=2572594 Score = 141 bits (156), Expect = 2e-31 Identities = 198/268 (74%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 49 CTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 107 ||| |||| ||| | ||||| | | ||||||||||||||| | ||||||||||||||| Sbjct 486335 CTGAGTGTCCCGCGTGGCCAGAAGCCTTTACTTTGAAAAAAATT-AGTGTTCAAAGCAGG 486393 Query 108 CCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 || || ||||| || |||||||| ||||||||| ||||||||||||||| Sbjct 486394 CCCGAGCCACCTGAATAGGCG-GCTAGGAATAATGGAATAGGAC-TGCGGTTCTATTTTG 486451 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224 ||||||| | || | | |||||||| |||||| | |||||| | ||||| Sbjct 486452 TTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGATGG-CGGGGGCATTCGTATTGTGCC 486510 Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 | |||| ||||||||||||| | |||||| || | | |||||| || ||||| Sbjct 486511 GCTAGAG-TGAAATTCTTGGACCCCTGCAAGACTGACCAAAGTGAAAGCATTTGCCAAGA 486569 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGT 312 |||||||||||||||| ||| |||||| Sbjct 486570 ATGTTTTCATTAATCA-AGAATGAAAGT 486596 >seq23 Length=50764286 Score = 138 bits (152), Expect = 2e-30 Identities = 205/284 (72%), Gaps = 9/284 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || |||||| | | | ||||||||||||||||||| | | Sbjct 14201245 ATGCTCTTAGCTGAGTGTCCCACGGAGCCCGAAGCGTTTACTTTGAAAAAATTAG--TAT 14201188 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||| ||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 14201187 TCATAGCAGGCGCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 14201129 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | | | || |||||||| ||| || ||||||| | Sbjct 14201128 TTCTATTTTGTTGGTTTTCGGAATTGAGGTCATGATTAAGAGG-ATGACCGGGGGTATTC 14201070 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| | ||||| || | | | |||| Sbjct 14201069 GTATTGCGCCTTTAGAGGTGAAATTCTTGGACCTGCGCAAGACAGACCAAAGGGGAAGCA 14201010 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||||||| ||| |||||| || || Sbjct 14201009 TTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTCAGAGG 14200967 >seq778 Length=60969063 Score = 118 bits (130), Expect = 2e-24 Identities = 175/242 (72%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAGCAT 130 |||||||||||| ||||||||||| |||||||||||| || | |||| ||| Sbjct 42982276 TTTACTTTGAAACAATTAGAGTGTCCAAAGCAGGCCTGAGCCGCCTGGATACTGCAGCTA 42982335 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| ||| |||||||||||||||||| | | || | | ||| | Sbjct 42982336 GGAATAATGGAATAGGAC-TGCTGTTCTATTTTGTTGGTTTTTGGAACTGAGGCCATGGT 42982394 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||| || ||| | || ||||| |||||||||||| Sbjct 42982395 TAAGAGGGAGGGCCGGGTCATTC-GTAAGC-GCTGCTAGAGGAGAAATTCTTGGACCAGC 42982452 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | | |||| | | || || |||||||||||||||| ||| |||| Sbjct 42982453 GCAAGACGGACCAGAGTGAAACCATCTGCCGAGAATGTTTTCATTAATCA-AGAATGAAA 42982511 Query 311 GT 312 || Sbjct 42982512 GT 42982513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915171345088