Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq919 149 3e-33
seq778 104 1e-19
seq1000 87.8 7e-15
seq12 84.2 9e-14
>seq919
Length=34509
Score = 149 bits (164), Expect = 3e-33
Identities = 105/120 (88%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 5144 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 5085
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 5084 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 5025
Score = 122 bits (134), Expect = 4e-25
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 6406 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 6347
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 6346 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 6287
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| ||| | ||| || ||
Sbjct 6286 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 6247
>seq778
Length=60969063
Score = 104 bits (114), Expect = 1e-19
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631
||| |||||||||||||||| |||| |||| |||||||| ||||||||||||||| |
Sbjct 42977328 CCCAAAAGATGGTGAACTATTCCTGGGCAGGGCGAAGCCAGGGGAAACTCTGGTGGAAGT 42977387
Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| | || ||| || |||||||||| | ||| | |||||||||||||||
Sbjct 42977388 TTGTAGTGGTCTTGACGTGCAAATCTGTTGTCCGACCTGGGTATAGGGGCGA 42977439
Score = 93.3 bits (102), Expect = 2e-16
Identities = 105/143 (73%), Gaps = 11/143 (8%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| ||||||||||||| | || |||| |||||| | | ||||| ||| |||
Sbjct 42976226 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTGAAT 42976285
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|||||||| |||||||| || | ||||| ||||||| |||||| |
Sbjct 42976286 -----------ACCGATAGTCAACAAGTAGTGTAAGGGAAAGCTGAAAAGAACTTTGAAG 42976334
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
|||||||| ||||| | |||||
Sbjct 42976335 AGAGAGTTCAAAAGGGCATGAAA 42976357
>seq1000
Length=59189873
Score = 87.8 bits (96), Expect = 7e-15
Identities = 105/140 (75%), Gaps = 6/140 (4%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| ||||||||||| | | ||||||| |||||| | | ||||| |||||||
Sbjct 34754029 GAGTTGGGTTGCTTGGGAATGCAACCCAAAATGGGTGGTAAACTCCATCTAAGGCTAAAT 34753970
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA-GAGT--GAT---CGAAAGATGAAAAGCACT 153
|||| ||||| |||| ||||||| ||| || ||||| ||||||| |||
Sbjct 34753969 GCTGGCACAAGACCAATAGTCAACAAGTACAAGTACCATATGGGAAAGTTGAAAAGAACT 34753910
Query 154 TTGGAAAGAGAGTTAAAAAG 173
||| | |||||||| || ||
Sbjct 34753909 TTGAAGAGAGAGTTCAAGAG 34753890
>seq12
Length=50730043
Score = 84.2 bits (92), Expect = 9e-14
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||| ||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 49274742 GAGTCCGGTTGCTTGCGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 49274683
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || ||||||||||| ||||||| | | ||||| ||||||| |||||| |
Sbjct 49274682 ACCAGCACGAGACCGATAGTCAACAAGTACCCTAAGGGAAAGTTGAAAAGAACTTTGCAG 49274623
Query 160 AGAG 163
||||
Sbjct 49274622 AGAG 49274619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079932840050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |