Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq919 149 3e-33 seq778 104 1e-19 seq1000 87.8 7e-15 seq12 84.2 9e-14 >seq919 Length=34509 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 5144 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 5085 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 5084 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 5025 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 6406 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 6347 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 6346 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 6287 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 6286 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 6247 >seq778 Length=60969063 Score = 104 bits (114), Expect = 1e-19 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 ||| |||||||||||||||| |||| |||| |||||||| ||||||||||||||| | Sbjct 42977328 CCCAAAAGATGGTGAACTATTCCTGGGCAGGGCGAAGCCAGGGGAAACTCTGGTGGAAGT 42977387 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | || ||| || |||||||||| | ||| | ||||||||||||||| Sbjct 42977388 TTGTAGTGGTCTTGACGTGCAAATCTGTTGTCCGACCTGGGTATAGGGGCGA 42977439 Score = 93.3 bits (102), Expect = 2e-16 Identities = 105/143 (73%), Gaps = 11/143 (8%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || |||| |||||| | | ||||| ||| ||| Sbjct 42976226 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTGAAT 42976285 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||||| |||||||| || | ||||| ||||||| |||||| | Sbjct 42976286 -----------ACCGATAGTCAACAAGTAGTGTAAGGGAAAGCTGAAAAGAACTTTGAAG 42976334 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| ||||| | ||||| Sbjct 42976335 AGAGAGTTCAAAAGGGCATGAAA 42976357 >seq1000 Length=59189873 Score = 87.8 bits (96), Expect = 7e-15 Identities = 105/140 (75%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||| | | ||||||| |||||| | | ||||| ||||||| Sbjct 34754029 GAGTTGGGTTGCTTGGGAATGCAACCCAAAATGGGTGGTAAACTCCATCTAAGGCTAAAT 34753970 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA-GAGT--GAT---CGAAAGATGAAAAGCACT 153 |||| ||||| |||| ||||||| ||| || ||||| ||||||| ||| Sbjct 34753969 GCTGGCACAAGACCAATAGTCAACAAGTACAAGTACCATATGGGAAAGTTGAAAAGAACT 34753910 Query 154 TTGGAAAGAGAGTTAAAAAG 173 ||| | |||||||| || || Sbjct 34753909 TTGAAGAGAGAGTTCAAGAG 34753890 >seq12 Length=50730043 Score = 84.2 bits (92), Expect = 9e-14 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 49274742 GAGTCCGGTTGCTTGCGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 49274683 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 49274682 ACCAGCACGAGACCGATAGTCAACAAGTACCCTAAGGGAAAGTTGAAAAGAACTTTGCAG 49274623 Query 160 AGAG 163 |||| Sbjct 49274622 AGAG 49274619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079932840050