Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= AAMG01000750.1
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
seq919 176 2e-42
seq778 149 3e-34
seq6 125 3e-27
>seq919
Length=34509
Score = 176 bits (194), Expect = 2e-42
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6627 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 6568
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||||||||||||||||||||||||||| ||||||||||
Sbjct 6567 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 6526
>seq778
Length=60969063
Score = 149 bits (164), Expect = 3e-34
Identities = 93/100 (93%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 42965935 GGAAAAGAAACTAACAAGGATTCCCTCAGTAATGGCGAGTGACCAGGGAAGAGCCCAGCG 42965994
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCG 100
||||||||||||||||||||||| | |||| ||||||||
Sbjct 42965995 CCGAATCCCCGCCCCGCGGTGGGACAGGGGAAATGTGGCG 42966034
Score = 131 bits (144), Expect = 8e-29
Identities = 86/95 (91%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 42962706 GGAAAAGAAACTAACAAGGATTCCCTCAGTAAAGAATAGTGAACAGGGAAGAGCCCAGCG 42962765
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATG 95
|| ||||||||||||||||||| ||| |||| |||
Sbjct 42962766 CCAAATCCCCGCCCCGCGGTGGCGCGTGGGAAATG 42962800
Score = 104 bits (114), Expect = 1e-20
Identities = 84/102 (82%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||| ||||||| |||||||||||||||| | ||||||||||||| ||||||||
Sbjct 42976017 GGAAAAGGAACTAACAAGGATTCCCTCAGTAAGGAATAGTGAACAGGGAACAGCCCAGCT 42976076
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
|| ||| || |||| || ||||| || ||| |||||| |||
Sbjct 42976077 CCAAATTCCTGCCCTGCAATGGGGTGCAGGAAATGTGGGGTA 42976118
>seq6
Length=4698588
Score = 125 bits (138), Expect = 3e-27
Identities = 81/89 (91%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 13 AACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGC 72
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 199034 AACAAGGATTCCCTCAGTAAAGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGC 198975
Query 73 CCCGCGGTGGGGCGCGGGACATGTGGCGT 101
||| ||||||| ||| | |||||||||
Sbjct 198974 CCCACGGTGGGTCGCCTGTAATGTGGCGT 198946
Score = 122 bits (134), Expect = 4e-26
Identities = 84/95 (88%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 170649 GGAAAAGAAACTAACAAGGATTCCCTCAGTAAAGGCGAGTGAACAGGGAAGAGCCCTGGG 170590
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATG 95
||||||||| |||| ||||| ||| |||| |||
Sbjct 170589 CCGAATCCCAGCCCTTCGGTGTGGCCTGGGAAATG 170555
Score = 122 bits (134), Expect = 4e-26
Identities = 85/97 (88%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 173985 GGAAAAGAAACTAACAAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAACAGCCCAGCA 173926
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97
| |||||||| || |||||| ||| |||| |||||
Sbjct 173925 CAGAATCCCCACCATGCGGTGAGGCAAGGGAAATGTG 173889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 230393237040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |