Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq919 176 2e-42 seq778 149 3e-34 seq6 125 3e-27 >seq919 Length=34509 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6627 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 6568 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||||||||||||||||||| |||||||||| Sbjct 6567 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 6526 >seq778 Length=60969063 Score = 149 bits (164), Expect = 3e-34 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 42965935 GGAAAAGAAACTAACAAGGATTCCCTCAGTAATGGCGAGTGACCAGGGAAGAGCCCAGCG 42965994 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCG 100 ||||||||||||||||||||||| | |||| |||||||| Sbjct 42965995 CCGAATCCCCGCCCCGCGGTGGGACAGGGGAAATGTGGCG 42966034 Score = 131 bits (144), Expect = 8e-29 Identities = 86/95 (91%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| Sbjct 42962706 GGAAAAGAAACTAACAAGGATTCCCTCAGTAAAGAATAGTGAACAGGGAAGAGCCCAGCG 42962765 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATG 95 || ||||||||||||||||||| ||| |||| ||| Sbjct 42962766 CCAAATCCCCGCCCCGCGGTGGCGCGTGGGAAATG 42962800 Score = 104 bits (114), Expect = 1e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||| ||||||| |||||||||||||||| | ||||||||||||| |||||||| Sbjct 42976017 GGAAAAGGAACTAACAAGGATTCCCTCAGTAAGGAATAGTGAACAGGGAACAGCCCAGCT 42976076 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || ||| || |||| || ||||| || ||| |||||| ||| Sbjct 42976077 CCAAATTCCTGCCCTGCAATGGGGTGCAGGAAATGTGGGGTA 42976118 >seq6 Length=4698588 Score = 125 bits (138), Expect = 3e-27 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 13 AACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGC 72 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 199034 AACAAGGATTCCCTCAGTAAAGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGC 198975 Query 73 CCCGCGGTGGGGCGCGGGACATGTGGCGT 101 ||| ||||||| ||| | ||||||||| Sbjct 198974 CCCACGGTGGGTCGCCTGTAATGTGGCGT 198946 Score = 122 bits (134), Expect = 4e-26 Identities = 84/95 (88%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | | Sbjct 170649 GGAAAAGAAACTAACAAGGATTCCCTCAGTAAAGGCGAGTGAACAGGGAAGAGCCCTGGG 170590 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATG 95 ||||||||| |||| ||||| ||| |||| ||| Sbjct 170589 CCGAATCCCAGCCCTTCGGTGTGGCCTGGGAAATG 170555 Score = 122 bits (134), Expect = 4e-26 Identities = 85/97 (88%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| Sbjct 173985 GGAAAAGAAACTAACAAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAACAGCCCAGCA 173926 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 | |||||||| || |||||| ||| |||| ||||| Sbjct 173925 CAGAATCCCCACCATGCGGTGAGGCAAGGGAAATGTG 173889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230393237040