Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3077 244 2e-62 seq919 244 2e-62 seq486 244 2e-62 seq267 201 2e-49 seq778 197 2e-48 seq123 118 2e-24 >seq3077 Length=3232 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 2317 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 2375 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 2376 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 2434 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 2435 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 2494 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 2495 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 2554 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 2555 ATCAATCTGTC 2565 >seq919 Length=34509 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 10221 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 10279 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 10280 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 10338 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 10339 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 10398 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 10399 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 10458 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 10459 ATCAATCTGTC 10469 >seq486 Length=117882 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 2374 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 2432 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 2433 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 2491 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 2492 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 2551 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 2552 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 2611 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 2612 ATCAATCTGTC 2622 >seq267 Length=25018440 Score = 201 bits (222), Expect = 2e-49 Identities = 197/250 (79%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 7155406 GTCAGTGTAGCGCACGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 7155464 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA---GCCACCAACCATA 131 ||| || | | |||||| | |||| | |||||||||||||| | |||| || | Sbjct 7155465 CAATCT-CGAGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAGGGACACCGACGCTC 7155523 Query 132 GTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | | | | ||| |||||| | | ||||| ||||||| || || |||||| ||| Sbjct 7155524 GGGGGTAGCATAACTAGTTAGCATGCCAGAGTCTCATTCGTTACCGTAACTAACCAAACA 7155583 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||| |||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| Sbjct 7155584 AATTGCTCCACCAACTAAGAATGGCCAGATACCACCACCCACGGAATCCAGAAAGAGCTA 7155643 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 7155644 TCAATCTGTC 7155653 >seq778 Length=60969063 Score = 197 bits (218), Expect = 2e-48 Identities = 198/253 (78%), Gaps = 17/253 (7%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||| ||||| |||| | |||||||||||||||||||||||||| |||| || Sbjct 42982993 TCAGTGTAGCGCACGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTGTTGC-TC 42982935 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATAG 132 | ||| | ||||| | |||| | |||||||||||||| | | | ||| Sbjct 42982934 AGTCTTGGGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTTGGGGACGCTGACCTC-- 42982878 Query 133 TCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 ||| |||| ||| |||||| | || |||||||| ||||||||||||||||| Sbjct 42982877 TCG--GGGGTTGCATAACTAGTTAGCATGCTAGAGTCTCGTTTGTTATCGGAATTAACCA 42982820 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||||||||||| | ||||||| |||||||||||||||||| | || |||| || Sbjct 42982819 GACAAATCACTCCACCTATTAAGAACAGCCATGCACCACCACCCACGGGATTGAGAAGGA 42982760 Query 245 GCTATCAATCTGT 257 ||||||||||||| Sbjct 42982759 GCTATCAATCTGT 42982747 >seq123 Length=34149886 Score = 118 bits (130), Expect = 2e-24 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| | ||||||||||||| ||| ||| |||||||||||| |||||||||||||||||| Sbjct 3100291 TTATTGAAATTAACCAGACAGATCGCTCTACCAACTAAGAATGGCCATGCACCACCACCC 3100350 Query 229 ATAGAATCAAGAAAGAGCTATCAAT 253 || ||||| |||||||||||||||| Sbjct 3100351 ATGGAATCCAGAAAGAGCTATCAAT 3100375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796775831811