Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq919 347 2e-93
seq778 253 3e-65
seq644 91.5 3e-16
>seq919
Length=34509
Score = 347 bits (384), Expect = 2e-93
Identities = 254/294 (86%), Gaps = 1/294 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 1999 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 2058
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2059 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2118
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2119 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 2178
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2179 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 2238
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | || | |||||||| ||||| | |||||| ||| |||||||
Sbjct 2239 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 2292
>seq778
Length=60969063
Score = 253 bits (280), Expect = 3e-65
Identities = 236/297 (79%), Gaps = 7/297 (2%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || | ||||||||||||||||||||| ||||||
Sbjct 42980231 TACTGAGCAGGATTACCATGGCAACAACACTTCATCAGTAGGGTAAAACTAACTTGTCTC 42980172
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 42980171 ACCACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTAAACAATCCAACCTTTGATG 42980112
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 42980111 AATTCTGCTACACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGGGATGTCGCTA 42980052
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTT--ATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237
| ||||||| |||||||||||||| || ||||||||||||||||| ||| | |
Sbjct 42980051 T----GCTTGGCCGCCACAAGCCAGTTAGATATCTGTGGTAACTTTTCTGATACCGCCTG 42979996
Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| | ||| | || | ||||| || ||||| | |||||| ||| | |||||
Sbjct 42979995 CTTAAAACCCAAAAGGTCAGAAGGACCGTGAGGCCCCCCTTTCACGGTCTACATTCA 42979939
>seq644
Length=9654622
Score = 91.5 bits (100), Expect = 3e-16
Identities = 104/139 (75%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC-- 148
||||||||||||||| |||| |||| || | ||||||| ||| |||||||||||
Sbjct 7528926 TTAGTGGGTGAACAAGCCAAGGCTTTGAGACTATTGCTTCGCAATGCTAGGAAGAGCCAA 7528985
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208
||||| ||||||| || ||| | ||| |||| |||| | | || |||| || ||
Sbjct 7528986 CACATCTAAGGATCCAAGAGCCAGCGGGCTGTGAATGCTTAGGGGTCAAGAGCCGGTGAT 7529045
Query 209 CCCTGTGGTAACTTTTCTG 227
||||| |||| |||||||
Sbjct 7529046 CCCTGCAGTAAGTTTTCTG 7529064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854373248736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |