Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq919 347 2e-93 seq778 253 3e-65 seq644 91.5 3e-16 >seq919 Length=34509 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 1999 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 2058 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2059 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2118 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2119 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 2178 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 2179 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 2238 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 2239 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 2292 >seq778 Length=60969063 Score = 253 bits (280), Expect = 3e-65 Identities = 236/297 (79%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || | ||||||||||||||||||||| |||||| Sbjct 42980231 TACTGAGCAGGATTACCATGGCAACAACACTTCATCAGTAGGGTAAAACTAACTTGTCTC 42980172 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||||||| ||||||||||| || | Sbjct 42980171 ACCACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTAAACAATCCAACCTTTGATG 42980112 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 42980111 AATTCTGCTACACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGGGATGTCGCTA 42980052 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTT--ATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 | ||||||| |||||||||||||| || ||||||||||||||||| ||| | | Sbjct 42980051 T----GCTTGGCCGCCACAAGCCAGTTAGATATCTGTGGTAACTTTTCTGATACCGCCTG 42979996 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | ||| | || | ||||| || ||||| | |||||| ||| | ||||| Sbjct 42979995 CTTAAAACCCAAAAGGTCAGAAGGACCGTGAGGCCCCCCTTTCACGGTCTACATTCA 42979939 >seq644 Length=9654622 Score = 91.5 bits (100), Expect = 3e-16 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC-- 148 ||||||||||||||| |||| |||| || | ||||||| ||| ||||||||||| Sbjct 7528926 TTAGTGGGTGAACAAGCCAAGGCTTTGAGACTATTGCTTCGCAATGCTAGGAAGAGCCAA 7528985 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||| ||||||| || ||| | ||| |||| |||| | | || |||| || || Sbjct 7528986 CACATCTAAGGATCCAAGAGCCAGCGGGCTGTGAATGCTTAGGGGTCAAGAGCCGGTGAT 7529045 Query 209 CCCTGTGGTAACTTTTCTG 227 ||||| |||| ||||||| Sbjct 7529046 CCCTGCAGTAAGTTTTCTG 7529064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854373248736