Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3077 197 3e-48 seq919 197 3e-48 seq486 197 3e-48 seq267 138 2e-30 seq778 107 4e-21 >seq3077 Length=3232 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2415 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2358 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 2357 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2298 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2297 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2238 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 2237 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 2178 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2177 AAGTCCCTGCCCTTTGTA 2160 >seq919 Length=34509 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 10319 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 10262 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 10261 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 10202 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 10201 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 10142 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 10141 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 10082 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 10081 AAGTCCCTGCCCTTTGTA 10064 >seq486 Length=117882 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2472 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2415 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 2414 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2355 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2354 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2295 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 2294 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 2235 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2234 AAGTCCCTGCCCTTTGTA 2217 >seq267 Length=25018440 Score = 138 bits (152), Expect = 2e-30 Identities = 188/258 (73%), Gaps = 21/258 (8%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | || | ||||| |||||||||||||||| Sbjct 7155504 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACTCGA-GATTGAG-CAATAACAGGTCTGTG 7155447 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||| ||||||||||||| | || | | | Sbjct 7155446 ATGCCCTTAGATGTCCGGGGCTGCACGTGCGCTACACTGACTG-GCTA-----TGC---- 7155397 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || | ||||| | | || | | ||||| ||||||| | | |||| Sbjct 7155396 ---TGGCAGG-----CACGGTAACCCACTGAACCCCATTCGTGATGGGGATTGGGAATTG 7155345 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | || ||||||| || ||||| ||| ||||| ||| | | ||||| Sbjct 7155344 CAATTATTCCCCATGAAGGAGGAATTCCCTGTAAGTGCGGGTCATGAGCTTGTGCTGATT 7155285 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||| |||||||||||| Sbjct 7155284 AAGTCTCTGCCCTTTGTA 7155267 >seq778 Length=60969063 Score = 107 bits (118), Expect = 4e-21 Identities = 184/263 (70%), Gaps = 12/263 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| |||| ||| |||||||||||| Sbjct 42982896 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGACTGAG-CAACAACAGGTCTGTG 42982953 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||| |||||||||||| | || || || | | Sbjct 42982954 ATGCCCTTAGATGTCCGGGGCTGCACGTGCGCTACACTGATTGGCTCAGCGTGTGCTTAC 42983013 Query 191 CCTTGGCCGGAAGGTC-----TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 ||| ||||| ||| | |||||| | | || | | ||||| ||| || | Sbjct 42983014 CCTACGCCGGCAGGGCAGGCACGGGTAACCGGTTGAACCCCATTCGTGATGGAAATCAGG 42983073 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||| | ||| | | || ||||||| || ||||| || |||| ||| || Sbjct 42983074 GATTGCAGTAATTCCCCAAGAATGAGGAATTCCCAGTAAATTCGGATCATAAGCTTGC-- 42983131 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 42983132 --CTTAAGTCCCTGCCCTTTGTA 42983152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947170343168