Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq3077 197 3e-48
seq919 197 3e-48
seq486 197 3e-48
seq267 138 2e-30
seq778 107 4e-21
>seq3077
Length=3232
Score = 197 bits (218), Expect = 3e-48
Identities = 201/258 (78%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 2415 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2358
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 2357 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2298
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 2297 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2238
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||
Sbjct 2237 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 2178
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 2177 AAGTCCCTGCCCTTTGTA 2160
>seq919
Length=34509
Score = 197 bits (218), Expect = 3e-48
Identities = 201/258 (78%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 10319 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 10262
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 10261 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 10202
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 10201 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 10142
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||
Sbjct 10141 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 10082
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 10081 AAGTCCCTGCCCTTTGTA 10064
>seq486
Length=117882
Score = 197 bits (218), Expect = 3e-48
Identities = 201/258 (78%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 2472 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2415
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 2414 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2355
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 2354 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2295
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||
Sbjct 2294 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 2235
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 2234 AAGTCCCTGCCCTTTGTA 2217
>seq267
Length=25018440
Score = 138 bits (152), Expect = 2e-30
Identities = 188/258 (73%), Gaps = 21/258 (8%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | || | ||||| ||||||||||||||||
Sbjct 7155504 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACTCGA-GATTGAG-CAATAACAGGTCTGTG 7155447
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||| ||||||||||||| | || | | |
Sbjct 7155446 ATGCCCTTAGATGTCCGGGGCTGCACGTGCGCTACACTGACTG-GCTA-----TGC---- 7155397
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| || | ||||| | | || | | ||||| ||||||| | | ||||
Sbjct 7155396 ---TGGCAGG-----CACGGTAACCCACTGAACCCCATTCGTGATGGGGATTGGGAATTG 7155345
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | || ||||||| || ||||| ||| ||||| ||| | | |||||
Sbjct 7155344 CAATTATTCCCCATGAAGGAGGAATTCCCTGTAAGTGCGGGTCATGAGCTTGTGCTGATT 7155285
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||| ||||||||||||
Sbjct 7155284 AAGTCTCTGCCCTTTGTA 7155267
>seq778
Length=60969063
Score = 107 bits (118), Expect = 4e-21
Identities = 184/263 (70%), Gaps = 12/263 (5%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | ||| |||| ||| ||||||||||||
Sbjct 42982896 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGACTGAG-CAACAACAGGTCTGTG 42982953
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||| |||||||||||| | || || || | |
Sbjct 42982954 ATGCCCTTAGATGTCCGGGGCTGCACGTGCGCTACACTGATTGGCTCAGCGTGTGCTTAC 42983013
Query 191 CCTTGGCCGGAAGGTC-----TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
||| ||||| ||| | |||||| | | || | | ||||| ||| || |
Sbjct 42983014 CCTACGCCGGCAGGGCAGGCACGGGTAACCGGTTGAACCCCATTCGTGATGGAAATCAGG 42983073
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||| | ||| | | || ||||||| || ||||| || |||| ||| ||
Sbjct 42983074 GATTGCAGTAATTCCCCAAGAATGAGGAATTCCCAGTAAATTCGGATCATAAGCTTGC-- 42983131
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
||| ||||||||||||||||
Sbjct 42983132 --CTTAAGTCCCTGCCCTTTGTA 42983152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947170343168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |