Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq919 473 4e-131 seq778 168 2e-39 seq245 80.6 9e-13 seq433 77.0 1e-11 >seq919 Length=34509 Score = 473 bits (524), Expect = 4e-131 Identities = 283/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 2652 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 2711 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2712 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 2771 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2772 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 2831 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2832 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 2891 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2892 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 2948 Score = 118 bits (130), Expect = 3e-24 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 2326 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 2385 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 2386 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 2440 Query 127 GGCCCGCG 134 || |||| Sbjct 2441 GGGTCGCG 2448 >seq778 Length=60969063 Score = 168 bits (186), Expect = 2e-39 Identities = 117/133 (88%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 42979584 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACTGTGCCAGACTAGAGTCAAGCTCAA 42979525 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| | Sbjct 42979524 CAGTGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTGCGCCGG 42979465 Query 357 ATAGTAGATAGGG 369 |||||| ||||| Sbjct 42979464 GTAGTAGGTAGGG 42979452 >seq245 Length=25487982 Score = 80.6 bits (88), Expect = 9e-13 Identities = 114/154 (74%), Gaps = 15/154 (10%) Strand=Plus/Plus Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT-GC---GCGTCACTAATTAG 413 ||||||||||||| ||||||| |||| |||||| | || |||||| | || Sbjct 15471119 TAGTAGATAGGGA--GTGGGAAGG-----AATC-ATTCATCGNTAGGCTTCACTATTCAG 15471170 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 || |||||||||||||||||| || ||| | ||||| |||| ||| ||| | || Sbjct 15471171 ATAGTGAGGCATTTGGCTACCTT--GAAAGTAAGAGTTATTCCCTGTGTT-ACCTTCACT 15471227 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 | |||||||||||||| | ||||||| ||||| Sbjct 15471228 TCATTGAATTTCTTCACATCAACATTCATAGCAC 15471261 >seq433 Length=14403672 Score = 77.0 bits (84), Expect = 1e-11 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 |||| ||| || ||||| |||| ||||||||||||| || ||||||| || | |||| Sbjct 10733611 GTTTTGCTGGAAAGTAGCTAGGAACAGTGGGAATCTTATTCATCCATTTGTGTACATCAC 10733552 Query 407 TAATTAGATGACGAGGCATTTGGCTAC 433 |||||||| || |||||||| || || Sbjct 10733551 CAATTAGATAACAAGGCATTTAGCGAC 10733525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635148801888