Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq919 389 1e-105 seq486 387 4e-105 seq778 306 1e-80 seq23 242 1e-61 seq267 230 7e-58 seq47 221 4e-55 seq755 77.0 1e-11 >seq919 Length=34509 Score = 389 bits (430), Expect = 1e-105 Identities = 422/555 (76%), Gaps = 56/555 (10%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 11190 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 11249 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11250 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 11309 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 11310 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 11369 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 11370 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 11429 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 || | |||||| | | ||||| || ||||||| || ||| Sbjct 11430 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 11489 Query 286 ----------CCGA-AGGGCGTT-----GGTT--TTTTATCTAATAAATACA------CC 321 |||| |||| | | |||| ||| |||| |||||| || || Sbjct 11490 CCGGCCGGGGCCGAGAGGGAGCTGACCGGGTTGGTTTGATCTGATAAATGCACGCATCCC 11549 Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 || ||||| ||||| | |||||||||||||||||||||||||| |||| Sbjct 11550 CCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 11607 Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 |||| |||| | || | | | |||| ||| ||||||||||||||||||||||||| Sbjct 11608 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 11667 Query 430 AGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 |||||||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 11668 AGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 11727 Query 490 TATGACTACTGGCAG 504 |||| |||||||||| Sbjct 11728 TATG-CTACTGGCAG 11741 >seq486 Length=117882 Score = 387 bits (428), Expect = 4e-105 Identities = 421/556 (76%), Gaps = 57/556 (10%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 3346 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 3405 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3406 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 3465 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 3466 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 3525 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 3526 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 3585 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 || | |||||| | | ||||| || ||||||| || ||| Sbjct 3586 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 3645 Query 286 ----------CCGA-AGGGCGTTG--------GTTTTTTATCTAATAAATACA------C 320 |||| |||| | || | |||| |||| |||||| || | Sbjct 3646 CCGGCCGGGGCCGAGAGGGAGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCC 3705 Query 321 CCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373 ||| ||||| ||||| | |||||||||||||||||||||||||| ||| Sbjct 3706 CCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTT 3763 Query 374 ATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 ||||| |||| | || | | | |||| ||| |||||||||||||||||||||||| Sbjct 3764 ATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCG 3823 Query 429 CAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||||||||||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 3824 CAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 3883 Query 489 ATATGACTACTGGCAG 504 ||||| |||||||||| Sbjct 3884 ATATG-CTACTGGCAG 3898 >seq778 Length=60969063 Score = 306 bits (338), Expect = 1e-80 Identities = 407/553 (74%), Gaps = 58/553 (10%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||| | ||||||| ||||| ||||||||||||| Sbjct 42982043 ACTCATTCCAATTACAGGGCCTCGAAAGGGTCCTGTATTGCTATTTTTTGTCACTACCTC 42981984 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | || ||| ||||||||||| || |||||||||||||||||||||| ||||| ||| Sbjct 42981983 CCTGGATCAGGAGTGGGTAATTTGTGCACCTGCTGCCTTCCTTGGATGTGTTAGCCATTT 42981924 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||| ||||||||||||| |||||| || |||||| | || ||||||| Sbjct 42981923 CTCAGGCTCCCTCTCTGGAATCGAACCCTGATTCCCTGTCACCCGTGGTCACTATGGTAG 42981864 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC----- 236 || ||||||| |||||||||||||||||| || ||||| | ||||| Sbjct 42981863 GCATGGCAACTACCATTGAAAGTTGATAGGGCAGATGTTCGAATGGGTCGTCGCCACCAT 42981804 Query 237 -GGCTCAAGGCCATGCGA--TTCGTTAAGTTAT-TATGA--ATCAC----CAAGGAGCCC 286 || | || | ||||| | | | ||||| || || |||| | || ||| Sbjct 42981803 GGGGTGGGGGGCTTGCGATCTGCCGGAGGTTATCTAGGACCCTCACCCTGCCGGGGGCCA 42981744 Query 287 CGAAGG-GC-------GTTGGTTTTTTATCTAATAAATACA-----CCCCTTC------- 326 || || || ||||| |||| || | |||||| || ||||| | Sbjct 42981743 AGAGGGAGCTGGCCAGGTTGG-TTTTGATATGATAAATGCATGCATCCCCTCCCCACCCC 42981685 Query 327 --CGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 ||||| |||| | || |||||||||||||||||||||||| ||| ||| Sbjct 42981684 CGCGAAG--AGGGTCAGCACAGGTCAGTATGTATTAGCTCTAGAATTACCACAGTTGTCC 42981627 Query 378 ATGTAGTA-AGGTAC----TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGT 432 | |||| | ||| || |||||| ||| |||| ||||||||||||||||||||||| Sbjct 42981626 AAGTAGGAGAGGAACGAGTGATCAAAGGAACCATAATTGATTTAATGAGCCATTCGCAGT 42981567 Query 433 TTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 ||||||||| || ||| |||||| | | ||||||||| ||||||||||||||||| Sbjct 42981566 TTCACTGTACCAGCCATGC--GTACTTACATAAGCATGGCTTGATCTTTGAGACAAGCAT 42981509 Query 491 ATGACTACTGGCA 503 ||| ||||||||| Sbjct 42981508 ATG-CTACTGGCA 42981497 >seq23 Length=50764286 Score = 242 bits (268), Expect = 1e-61 Identities = 397/565 (70%), Gaps = 73/565 (13%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| ||||||| ||| | | ||||||||||| Sbjct 14201427 ACTCATTCCAATTACAGGGCCTGGAAAGAGTCCTGTATTGTTATCTTTCGTCACTACCTC 14201486 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||||||| ||| | |||||||||| |||||||||||||||||||||||||| ||| Sbjct 14201487 CCCAGGTCGGGAGTGGATTATTTGCGCGCTTGCTGCCTTCCTTGGATGTGGTAGCCATTT 14201546 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||| ||||||| ||||||||| ||||| | |||||||||| Sbjct 14201547 CTCAGGCTCCCTCTCCGGAATTGAACCCTGATTCCCCGTCTCCCGTGGTCACCATGGTAG 14201606 Query 182 GCCACTAT-CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG---AACCATCGCCG 237 | ||| | | |||||||||| |||||||||| || |||| ||| |||| Sbjct 14201607 G-CACGGTGACAACCATCGAAA----ATAGGGCAGATGTTCAAATGGGTCTTCATGGCCG 14201661 Query 238 GCTC----------AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCA------- 278 | | || |||||| | | ||||| || |||||| Sbjct 14201662 CCACGGAGTGGGGGGGGGAGGTGCGATCACCCCAAGGTTATCTAGAGTCACCAAAGCCAC 14201721 Query 279 AGGAGCCC--------------CGAAGG---------GCGTTGGTTTTTTATCTAATAAA 315 ||| | || |||| | | ||||| |||| |||| ||||| Sbjct 14201722 AGGCGTCCGCCTCGGGCCGGGGCGAAAGAGAAAGCCCGGGTTGG-TTTTGATCTGATAAA 14201780 Query 316 T------ACACCCCTTCCGAAG----TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 | | ||||| | ||||| || | || ||||||||||||||| ||||| Sbjct 14201781 TGCAAGCATACCCCCTGCGAAGGGGCTCAGCCCCATTGACATGTATTAGCTCTATAATTA 14201840 Query 366 CCACGGTTATCCATGTAGTA-AGGTACTA---TCAAATAAACGATAACTGATTTAATGAG 421 |||| |||||||| |||| | ||| | | | || || ||||||||||||||||| Sbjct 14201841 CCACAGTTATCCAAGTAGGAGAGGAGCGAGCGGCCAAGGCACCATAACTGATTTAATGAG 14201900 Query 422 CCATTCGCAGTTTCACTGT-ATAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||| |||||| || || ||| ||| || ||| || ||||||||||||||| Sbjct 14201901 CCATTCACAGTTTGACGGTCCTAGCCATGCGTA---CTAGGCACACATGGCTTAATCTTT 14201957 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| |||||||||| Sbjct 14201958 GAGACAAGCATAT-TCTACTGGCAG 14201981 >seq267 Length=25018440 Score = 230 bits (254), Expect = 7e-58 Identities = 194/236 (82%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||| ||||| | || |||||| |||| || ||||| | ||||||||||| Sbjct 7156366 ACTCATTCCAGTTACAGGGCCTTGAAAGAGTCCTGCATTGTTATTTTTCGTCACTACCTC 7156425 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | ||||||| |||||||||||||||||||||||||| |||||| |||||||| |||| Sbjct 7156426 CCTGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTTCTTGGAGGTGGTAGC-GTTT 7156484 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||| ||||||||||| ||||| ||| |||||| | |||||||||| Sbjct 7156485 CTCAGGCTCCCTCTCCGAAATCGAACCCTGATTCCGCGTCACCCGTGGTCACCATGGTAG 7156544 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 || | |||| |||||||| | ||||| ||||| || |||| |||||||| Sbjct 7156545 GCACAGAGACTACTATCGAAAGGTTATAGGACAGAAGTTCTAATGGGTCATCGCCG 7156600 >seq47 Length=2572594 Score = 221 bits (244), Expect = 4e-55 Identities = 203/254 (80%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | ||||||| |||| | ||||| | ||||||| || Sbjct 486133 ACTCATTCCAATTACAGGGCCTCGAAAGAGCTCTGTGTTGCTATTTTTCCTCACTACTTC 486074 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | ||||||| || |||||||||| ||||||||| ||||| | ||||||||||| ||| Sbjct 486073 CCTGGGTCGGGAGTGTGTAATTTGCGTGCCTGCTGCTTTCCTCGAATGTGGTAGCCATTT 486014 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||| ||||||||||||| ||||| | | |||| | | | |||||||| Sbjct 486013 CTCAGGCTCCCTCTCAGGAATCGAACCCTGATTCCACATCACCCATGGTCAACATGGTAG 485954 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | | | |||||| | Sbjct 485953 GCATGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGATCGTTGCCGGCAC 485894 Query 242 -AAGGCCATGCGAT 254 || |||||||| Sbjct 485893 GGGGGGCATGCGAT 485880 >seq755 Length=8082034 Score = 77.0 bits (84), Expect = 1e-11 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| |||| || |||| || || || ||| |||| ||| ||||| |||||||| Sbjct 2194625 TATTTTTTGTTACCACCTATCCAGATCAAGAGTGGATAATCTGCATGCCTGATGCCTTCC 2194566 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAAT 142 |||||||||| |||| ||| | |||||| || || ||||| Sbjct 2194565 TTGGATGTGGGAGCCATTTTTTAGGCTCTCTGTCTGGAAT 2194526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510352709376