Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq919 389 1e-105
seq486 387 4e-105
seq778 306 1e-80
seq23 242 1e-61
seq267 230 7e-58
seq47 221 4e-55
seq755 77.0 1e-11
>seq919
Length=34509
Score = 389 bits (430), Expect = 1e-105
Identities = 422/555 (76%), Gaps = 56/555 (10%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 11190 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 11249
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11250 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 11309
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 11310 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 11369
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | |||||| | |
Sbjct 11370 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 11429
Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285
|| | |||||| | | ||||| || ||||||| || |||
Sbjct 11430 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 11489
Query 286 ----------CCGA-AGGGCGTT-----GGTT--TTTTATCTAATAAATACA------CC 321
|||| |||| | | |||| ||| |||| |||||| || ||
Sbjct 11490 CCGGCCGGGGCCGAGAGGGAGCTGACCGGGTTGGTTTGATCTGATAAATGCACGCATCCC 11549
Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374
|| ||||| ||||| | |||||||||||||||||||||||||| ||||
Sbjct 11550 CCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 11607
Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429
|||| |||| | || | | | |||| ||| |||||||||||||||||||||||||
Sbjct 11608 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 11667
Query 430 AGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489
|||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 11668 AGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 11727
Query 490 TATGACTACTGGCAG 504
|||| ||||||||||
Sbjct 11728 TATG-CTACTGGCAG 11741
>seq486
Length=117882
Score = 387 bits (428), Expect = 4e-105
Identities = 421/556 (76%), Gaps = 57/556 (10%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 3346 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 3405
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3406 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 3465
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 3466 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 3525
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | |||||| | |
Sbjct 3526 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 3585
Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285
|| | |||||| | | ||||| || ||||||| || |||
Sbjct 3586 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 3645
Query 286 ----------CCGA-AGGGCGTTG--------GTTTTTTATCTAATAAATACA------C 320
|||| |||| | || | |||| |||| |||||| || |
Sbjct 3646 CCGGCCGGGGCCGAGAGGGAGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCC 3705
Query 321 CCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373
||| ||||| ||||| | |||||||||||||||||||||||||| |||
Sbjct 3706 CCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTT 3763
Query 374 ATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428
||||| |||| | || | | | |||| ||| ||||||||||||||||||||||||
Sbjct 3764 ATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCG 3823
Query 429 CAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488
||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 3824 CAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 3883
Query 489 ATATGACTACTGGCAG 504
||||| ||||||||||
Sbjct 3884 ATATG-CTACTGGCAG 3898
>seq778
Length=60969063
Score = 306 bits (338), Expect = 1e-80
Identities = 407/553 (74%), Gaps = 58/553 (10%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||| | ||||||| ||||| |||||||||||||
Sbjct 42982043 ACTCATTCCAATTACAGGGCCTCGAAAGGGTCCTGTATTGCTATTTTTTGTCACTACCTC 42981984
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| | || ||| ||||||||||| || |||||||||||||||||||||| ||||| |||
Sbjct 42981983 CCTGGATCAGGAGTGGGTAATTTGTGCACCTGCTGCCTTCCTTGGATGTGTTAGCCATTT 42981924
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||| ||||||||||||| |||||| || |||||| | || |||||||
Sbjct 42981923 CTCAGGCTCCCTCTCTGGAATCGAACCCTGATTCCCTGTCACCCGTGGTCACTATGGTAG 42981864
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC----- 236
|| ||||||| |||||||||||||||||| || ||||| | |||||
Sbjct 42981863 GCATGGCAACTACCATTGAAAGTTGATAGGGCAGATGTTCGAATGGGTCGTCGCCACCAT 42981804
Query 237 -GGCTCAAGGCCATGCGA--TTCGTTAAGTTAT-TATGA--ATCAC----CAAGGAGCCC 286
|| | || | ||||| | | | ||||| || || |||| | || |||
Sbjct 42981803 GGGGTGGGGGGCTTGCGATCTGCCGGAGGTTATCTAGGACCCTCACCCTGCCGGGGGCCA 42981744
Query 287 CGAAGG-GC-------GTTGGTTTTTTATCTAATAAATACA-----CCCCTTC------- 326
|| || || ||||| |||| || | |||||| || ||||| |
Sbjct 42981743 AGAGGGAGCTGGCCAGGTTGG-TTTTGATATGATAAATGCATGCATCCCCTCCCCACCCC 42981685
Query 327 --CGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377
||||| |||| | || |||||||||||||||||||||||| ||| |||
Sbjct 42981684 CGCGAAG--AGGGTCAGCACAGGTCAGTATGTATTAGCTCTAGAATTACCACAGTTGTCC 42981627
Query 378 ATGTAGTA-AGGTAC----TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGT 432
| |||| | ||| || |||||| ||| |||| |||||||||||||||||||||||
Sbjct 42981626 AAGTAGGAGAGGAACGAGTGATCAAAGGAACCATAATTGATTTAATGAGCCATTCGCAGT 42981567
Query 433 TTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490
||||||||| || ||| |||||| | | ||||||||| |||||||||||||||||
Sbjct 42981566 TTCACTGTACCAGCCATGC--GTACTTACATAAGCATGGCTTGATCTTTGAGACAAGCAT 42981509
Query 491 ATGACTACTGGCA 503
||| |||||||||
Sbjct 42981508 ATG-CTACTGGCA 42981497
>seq23
Length=50764286
Score = 242 bits (268), Expect = 1e-61
Identities = 397/565 (70%), Gaps = 73/565 (13%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || |||||| ||||||| ||| | | |||||||||||
Sbjct 14201427 ACTCATTCCAATTACAGGGCCTGGAAAGAGTCCTGTATTGTTATCTTTCGTCACTACCTC 14201486
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
||| ||||||| ||| | |||||||||| |||||||||||||||||||||||||| |||
Sbjct 14201487 CCCAGGTCGGGAGTGGATTATTTGCGCGCTTGCTGCCTTCCTTGGATGTGGTAGCCATTT 14201546
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||| ||||||| ||||||||| ||||| | ||||||||||
Sbjct 14201547 CTCAGGCTCCCTCTCCGGAATTGAACCCTGATTCCCCGTCTCCCGTGGTCACCATGGTAG 14201606
Query 182 GCCACTAT-CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG---AACCATCGCCG 237
| ||| | | |||||||||| |||||||||| || |||| ||| ||||
Sbjct 14201607 G-CACGGTGACAACCATCGAAA----ATAGGGCAGATGTTCAAATGGGTCTTCATGGCCG 14201661
Query 238 GCTC----------AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCA------- 278
| | || |||||| | | ||||| || ||||||
Sbjct 14201662 CCACGGAGTGGGGGGGGGAGGTGCGATCACCCCAAGGTTATCTAGAGTCACCAAAGCCAC 14201721
Query 279 AGGAGCCC--------------CGAAGG---------GCGTTGGTTTTTTATCTAATAAA 315
||| | || |||| | | ||||| |||| |||| |||||
Sbjct 14201722 AGGCGTCCGCCTCGGGCCGGGGCGAAAGAGAAAGCCCGGGTTGG-TTTTGATCTGATAAA 14201780
Query 316 T------ACACCCCTTCCGAAG----TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365
| | ||||| | ||||| || | || ||||||||||||||| |||||
Sbjct 14201781 TGCAAGCATACCCCCTGCGAAGGGGCTCAGCCCCATTGACATGTATTAGCTCTATAATTA 14201840
Query 366 CCACGGTTATCCATGTAGTA-AGGTACTA---TCAAATAAACGATAACTGATTTAATGAG 421
|||| |||||||| |||| | ||| | | | || || |||||||||||||||||
Sbjct 14201841 CCACAGTTATCCAAGTAGGAGAGGAGCGAGCGGCCAAGGCACCATAACTGATTTAATGAG 14201900
Query 422 CCATTCGCAGTTTCACTGT-ATAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479
|||||| |||||| || || ||| ||| || ||| || |||||||||||||||
Sbjct 14201901 CCATTCACAGTTTGACGGTCCTAGCCATGCGTA---CTAGGCACACATGGCTTAATCTTT 14201957
Query 480 GAGACAAGCATATGACTACTGGCAG 504
||||||||||||| ||||||||||
Sbjct 14201958 GAGACAAGCATAT-TCTACTGGCAG 14201981
>seq267
Length=25018440
Score = 230 bits (254), Expect = 7e-58
Identities = 194/236 (82%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||| ||||| | || |||||| |||| || ||||| | |||||||||||
Sbjct 7156366 ACTCATTCCAGTTACAGGGCCTTGAAAGAGTCCTGCATTGTTATTTTTCGTCACTACCTC 7156425
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| | ||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||
Sbjct 7156426 CCTGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTTCTTGGAGGTGGTAGC-GTTT 7156484
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||| ||||||||||| ||||| ||| |||||| | ||||||||||
Sbjct 7156485 CTCAGGCTCCCTCTCCGAAATCGAACCCTGATTCCGCGTCACCCGTGGTCACCATGGTAG 7156544
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
|| | |||| |||||||| | ||||| ||||| || |||| ||||||||
Sbjct 7156545 GCACAGAGACTACTATCGAAAGGTTATAGGACAGAAGTTCTAATGGGTCATCGCCG 7156600
>seq47
Length=2572594
Score = 221 bits (244), Expect = 4e-55
Identities = 203/254 (80%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | ||||||| |||| | ||||| | ||||||| ||
Sbjct 486133 ACTCATTCCAATTACAGGGCCTCGAAAGAGCTCTGTGTTGCTATTTTTCCTCACTACTTC 486074
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| | ||||||| || |||||||||| ||||||||| ||||| | ||||||||||| |||
Sbjct 486073 CCTGGGTCGGGAGTGTGTAATTTGCGTGCCTGCTGCTTTCCTCGAATGTGGTAGCCATTT 486014
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||| ||||||||||||| ||||| | | |||| | | | ||||||||
Sbjct 486013 CTCAGGCTCCCTCTCAGGAATCGAACCCTGATTCCACATCACCCATGGTCAACATGGTAG 485954
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | | | |||||| |
Sbjct 485953 GCATGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGATCGTTGCCGGCAC 485894
Query 242 -AAGGCCATGCGAT 254
|| ||||||||
Sbjct 485893 GGGGGGCATGCGAT 485880
>seq755
Length=8082034
Score = 77.0 bits (84), Expect = 1e-11
Identities = 77/100 (77%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| |||| || |||| || || || ||| |||| ||| ||||| ||||||||
Sbjct 2194625 TATTTTTTGTTACCACCTATCCAGATCAAGAGTGGATAATCTGCATGCCTGATGCCTTCC 2194566
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAAT 142
|||||||||| |||| ||| | |||||| || || |||||
Sbjct 2194565 TTGGATGTGGGAGCCATTTTTTAGGCTCTCTGTCTGGAAT 2194526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510352709376
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