Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq29 95.1 1e-14 >seq1 Length=88624873 Score = 109 bits (120), Expect = 4e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||||||| || | ||||| || || |||||||||||||||| Sbjct 4801456 TGGAGCGCTTCAGCCAGGAGGTGCAGGTCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGA 4801515 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||| ||||| |||||||| ||||||||||| | |||||||| || || ||||| | Sbjct 4801516 TCCTCATCGAGAACGTCCACTCCGAGATGTACAGCCTGCTCATCGACACCTATATCAGAG 4801575 Query 61376 AGC 61378 ||| Sbjct 4801576 AGC 4801578 >seq29 Length=3441549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | ||||| || ||||||||||||||||||| Sbjct 3376491 TGGAGCGGTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGA 3376432 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | |||||||| || | || || || ||||||||| | ||||||||||| || |||| Sbjct 3376431 TCGCCATGGAAAACATTCATTCCGAAATGTACAGTCTCCTCATCGATACTTATATCA 3376375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552829177840