Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2606 174 3e-41 seq55 174 3e-41 seq2216 170 4e-40 seq3002 161 2e-37 seq3132 150 3e-34 seq3136 114 2e-23 >seq2606 Length=117996 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 3263 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3204 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 3203 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 3145 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 3144 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 3085 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 3084 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 3025 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 3024 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 2988 >seq55 Length=3419 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 3179 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3120 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 3119 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 3061 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 3060 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 3001 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 3000 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 2941 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 2940 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 2904 >seq2216 Length=34530 Score = 170 bits (188), Expect = 4e-40 Identities = 208/278 (75%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 11009 ATGCTCTTAGCTGAGTGTCCCGCGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 10951 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 10950 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 10892 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 10891 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 10832 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 10831 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 10772 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 10771 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 10735 >seq3002 Length=2574654 Score = 161 bits (178), Expect = 2e-37 Identities = 208/280 (74%), Gaps = 13/280 (5%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||| ||| ||| |||| ||| | ||| | | | ||||||||||||||||||||||||| Sbjct 486734 TGCTCTTAGCTGAGTGTCCCGTGTGGCCCGAAGCCTTTACTTTGAAAAAATTAGAGTGTT 486793 Query 99 CAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||||| || | |||| ||| |||||||||| ||||||| ||||| Sbjct 486794 CAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATAGGATAGGAC-CGCGGT 486852 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | | || | | |||||||| |||||| | | |||| | | Sbjct 486853 TCTATTTTGTTGGTTTTTGGAACTGAGGCCATGATTAAGAGGGATGGCCAGGGGCATTCG 486912 Query 216 TATTCAATTGTC---AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 |||| || | ||| |||||||||||||| | ||||| || | ||||||| Sbjct 486913 TATT---GTGCCCCTAGA-GTGAAATTCTTGGACCCGTGCAAGACGGACCAAAGCGAAAG 486968 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | || ||||| |||||||||||||||| ||| |||||| Sbjct 486969 CATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGT 487007 >seq3132 Length=50790421 Score = 150 bits (166), Expect = 3e-34 Identities = 207/284 (73%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || |||||| | | | ||||||||||||||||||| | | Sbjct 14206955 ATGCTCTTAGCTGAGTGTCCCACGGAGCCCGAAGCGTTTACTTTGAAAAAATTAG--TAT 14206898 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||| |||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 14206897 TCATAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 14206839 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | | | || |||||||| |||||| |||||| | Sbjct 14206838 TTCTATTTTGTTGGTTTTCGGAATTGAGGTCATGATTAAGAGGGATGACCGGGGGCATTC 14206779 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||||||||||||||||| | ||||| || | | | |||| Sbjct 14206778 GTATTGCGCCGTTAGAGGTGAAATTCTTGGACCTGCGCAAGACAGACCAAAGGGGAAGCA 14206719 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||||||| ||| |||||| || || Sbjct 14206718 TTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTCAGAGG 14206676 >seq3136 Length=61004451 Score = 114 bits (126), Expect = 2e-23 Identities = 174/242 (72%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAGCAT 130 |||||||||||| ||||||| ||| |||||||||||| || | |||| ||| Sbjct 43008828 TTTACTTTGAAACAATTAGAATGTCCAAAGCAGGCCTGAGCCGCCTGGATACTGCAGCTA 43008887 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| ||| |||||||||||||||||| | | || | | ||| | Sbjct 43008888 GGAATAATGGAATAGGAC-TGCTGTTCTATTTTGTTGGTTTTTGGAACTGAGGCCATGGT 43008946 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||| || ||| | || ||||| |||||||||||| Sbjct 43008947 TAAGAGGGAGGGCCGGGTCATTC-GTAAGC-GCTGCTAGAGGAGAAATTCTTGGACCAGC 43009004 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | | |||| | | || || |||||||||||||||| ||| |||| Sbjct 43009005 GCAAGACGGACCAGAGTGAAACCATCTGCCGAGAATGTTTTCATTAATCA-AGAATGAAA 43009063 Query 311 GT 312 || Sbjct 43009064 GT 43009065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915171226112