Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq2216 176 2e-42 seq3136 149 3e-34 seq3141 140 1e-31 seq3039 125 3e-27 seq3142 123 1e-26 seq3124 102 4e-20 >seq2216 Length=34530 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6635 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 6576 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||||||||||||||||||| |||||||||| Sbjct 6575 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 6534 >seq3136 Length=61004451 Score = 149 bits (164), Expect = 3e-34 Identities = 95/102 (93%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| ||| ||||| ||||||||| ||||||| Sbjct 42987030 GGAAAAGAAACTAACAAGGATTCCCTCAGTAATGGCAAGTGACCAGGGAAGACCCCAGCG 42987089 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||| |||||| |||||||||| Sbjct 42987090 CCGAATCCCCGCCCCGCGGTGGGG-GCGGGAAATGTGGCGTA 42987130 Score = 136 bits (150), Expect = 2e-30 Identities = 89/98 (91%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| ||| Sbjct 42992461 GGAAAAGAAACTAACAAGGATTCCCTCAGTAATGGCGAGTGACCAGGGAAGAGCCCGGCG 42992520 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGG 98 |||||||||||||| |||||||| | |||| |||||| Sbjct 42992521 CCGAATCCCCGCCCTGCGGTGGGACAGGGGAAATGTGG 42992558 Score = 131 bits (144), Expect = 8e-29 Identities = 86/95 (91%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| Sbjct 42989228 GGAAAAGAAACTAACAAGGATTCCCTCAGTAAAGAATAGTGAACAGGGAAGAGCCCAGCG 42989287 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATG 95 || ||||||||||||||||||| ||| |||| ||| Sbjct 42989288 CCAAATCCCCGCCCCGCGGTGGCGCGTGGGAAATG 42989322 Score = 102 bits (112), Expect = 4e-20 Identities = 76/89 (85%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 8 AAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATC 67 |||||||| ||||||||||| | || |||||||| |||||||||||||||||||| Sbjct 42985787 AAACTAACAAGGATTCCCTCTG-----GCAAGTGAACACAGAAGAGCCCAGCGCCGAATC 42985841 Query 68 CCCGCCCCGCGGTGGGGCGCGGGACATGT 96 ||| |||||||||||||||| ||| |||| Sbjct 42985842 CCCACCCCGCGGTGGGGCGCAGGAAATGT 42985870 Score = 98.7 bits (108), Expect = 5e-19 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||| ||||||| |||||||||||||||| | ||||||||||||| || |||| Sbjct 43002560 GGAAAAGGAACTAACAAGGATTCCCTCAGTAAGGAATAGTGAACAGGGAACAGTTCAGCT 43002619 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || ||| ||||||| || ||||| || ||| |||||| ||| Sbjct 43002620 CCAAATTCCCGCCCTGCAATGGGGTGCAGGAAATGTGGGGTA 43002661 >seq3141 Length=78381119 Score = 140 bits (154), Expect = 1e-31 Identities = 92/101 (91%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||||||||||| |||||| ||| ||| ||||||||||| Sbjct 70969405 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACCGCGAGTAAACCGGGCAGAGCCCAGCG 70969346 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGT 101 ||||||||| |||| ||||||||||||||| ||||||||| Sbjct 70969345 CCGAATCCCTGCCC--CGGTGGGGCGCGGGAAATGTGGCGT 70969307 >seq3039 Length=4703176 Score = 125 bits (138), Expect = 3e-27 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 13 AACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGC 72 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 200458 AACAAGGATTCCCTCAGTAAAGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGC 200399 Query 73 CCCGCGGTGGGGCGCGGGACATGTGGCGT 101 ||| ||||||| ||| | ||||||||| Sbjct 200398 CCCACGGTGGGTCGCCTGTAATGTGGCGT 200370 Score = 122 bits (134), Expect = 4e-26 Identities = 84/95 (88%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | | Sbjct 172073 GGAAAAGAAACTAACAAGGATTCCCTCAGTAAAGGCGAGTGAACAGGGAAGAGCCCTGGG 172014 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATG 95 ||||||||| |||| ||||| ||| |||| ||| Sbjct 172013 CCGAATCCCAGCCCTTCGGTGTGGCCTGGGAAATG 171979 Score = 116 bits (128), Expect = 2e-24 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||| Sbjct 175409 GGAAAAGAAACTAACAAGGATTCCCTCAGTAATGGTGAGTGAACAGGGAACAGCCCAGCA 175350 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 | |||||||| || |||||| ||| |||| ||||| Sbjct 175349 CAGAATCCCCACCATGCGGTGAGGCAAGGGAAATGTG 175313 Score = 89.7 bits (98), Expect = 2e-16 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 4 AAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCG 63 ||||| |||||| |||| ||||||||| | |||| |||||| ||| | |||| ||||||| Sbjct 197009 AAAGAGACTAACAAGGACTCCCTCAGTGATGGCGCGTGAACGGGGGACAGCC-AGCGCCG 196951 Query 64 AATCCCCGCCCC-GCGGTGGGGCGCGGGACATGTGGCGTA 102 || ||||||||| |||||| | | |||| |||||||||| Sbjct 196950 AA-CCCCGCCCCTGCGGTGCTGTGAGGGA-ATGTGGCGTA 196913 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/79 (81%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 17 AGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCG 76 ||| ||||||||||| |||||||||||||| ||||||||||||| ||||| || | Sbjct 167746 AGGGTTCCCTCAGTAC--GCGAGTGAACAGGGGAGAGCCCAGCGCCCTGTCCCCACCGCT 167689 Query 77 CGGTGGGGCGCGGGACATG 95 ||| ||| |||||| ||| Sbjct 167688 CGGCTGGGTGCGGGAAATG 167670 >seq3142 Length=81131790 Score = 123 bits (136), Expect = 1e-26 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 ||||||||| ||| |||||||||||||||| || |||||||||||||||| ||||||||| Sbjct 72055889 AAAAGAAACGAACAAGGATTCCCTCAGTAAAGGTGAGTGAACAGGGAAGATCCCAGCGCC 72055830 Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 ||||| ||||||| |||| |||||| ||| ||||| Sbjct 72055829 GAATCACCGCCCCACGGT-GGGCGCAGGAAATGTG 72055796 >seq3124 Length=37078832 Score = 102 bits (112), Expect = 4e-20 Identities = 83/100 (83%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||||||||| || || ||||||||||||| ||| ||||||||||||||||| |||||| Sbjct 11450396 AAAAGAAACTGACAAGAATTCCCTCAGTAATTGCGTGTGAACAGGGAAGAGCCTAGCGCC 11450455 Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||| || | ||||| | |||| ||||| |||| Sbjct 11450456 GAATCCCCATCC--CCATGGGGTGTGGGAAATGTGCCGTA 11450493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230393208960