Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2216 347 2e-93 seq3110 313 4e-83 seq3132 271 1e-70 seq3136 259 8e-67 seq3141 257 3e-66 seq3117 89.7 9e-16 seq3076 89.7 9e-16 >seq2216 Length=34530 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 1999 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 2058 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2059 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2118 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2119 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 2178 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 2179 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 2238 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 2239 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 2292 >seq3110 Length=25029222 Score = 313 bits (346), Expect = 4e-83 Identities = 227/263 (86%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||||||||||||||||| |||||| || ||||||||||||||||||||||||| Sbjct 7160484 TCATGAGTAGGGTAAAACTAACCGGTCTCAGGATAGTCTAAACCCAGCTCACGTTCCCTA 7160543 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| ||||||||| || ||||||||||||||||| Sbjct 7160544 TTAGTGGGTGAACAATCCAAGGCTTGGTGAATTCTGCCTCACAATGATAGGAAGAGCCGA 7160603 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||| Sbjct 7160604 CATCGAAGGATCAAAAAGCGACGTTGCTATGAAAGCTTGGCCGCCACAAGCCAGTTATCC 7160663 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||| |||||||||| ||||||| || | ||| | || | |||||||| ||| Sbjct 7160664 CTGTGGGAACTTTTCTGACACCTCTTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGG 7160723 Query 271 CCACACTTTCATGGTTTGTATTC 293 || |||||||| ||| ||||||| Sbjct 7160724 CCCCACTTTCACGGTCTGTATTC 7160746 >seq3132 Length=50790421 Score = 271 bits (300), Expect = 1e-70 Identities = 237/292 (81%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 3 CTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTCAT 61 || ||| | |||||||| | | | || |||||| |||||||||||| ||||| ||| Sbjct 14209072 CTGAGCAGGATTACCATGGCGACAACACAGCATCAGCAGGGTAAAACTAGCCTGTGTCAC 14209131 Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||| ||| Sbjct 14209132 GACGGTCTACACCCAGCTCACGGTCCCTATGAGTGGGTGAACAATCCAGCGCTTGGGGAA 14209191 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| |||||||||||||| ||||||||||||| ||| | ||||||||||| Sbjct 14209192 TTCTGCTTCACAGTGATAGGAAGAGCC-ACATCGAAGGATCCAAACTCGACGTCGCTATG 14209250 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 |||||||||| ||||||||||||||| ||||||||||||||||||| |||||| || | Sbjct 14209251 AACGCTTGGCCGCCACAAGCCAGTTAGCCCTGTGGTAACTTTTCTGACACCTCCTGCTTA 14209310 Query 242 AAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | || | ||||||| ||||| | ||||| ||| ||||||| Sbjct 14209311 AAACCCAAAAGGTCAGGAGGATCGTGAGGCCCCGCTTTCGCGGTCTGTATTC 14209362 >seq3136 Length=61004451 Score = 259 bits (286), Expect = 8e-67 Identities = 237/297 (80%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||| ||||| |||||| Sbjct 43006779 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAGACTAATTTGTCTC 43006720 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||| ||||||||||| || | Sbjct 43006719 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTAAACAATCCAACCTTTGATG 43006660 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 43006659 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGGGATGTCGCTA 43006600 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTT--ATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 | ||||||| |||||||||||||| || ||||||||||||||||| ||| | | Sbjct 43006599 T----GCTTGGCCGCCACAAGCCAGTTAGATATCTGTGGTAACTTTTCTGATACCGCCTG 43006544 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | ||| | || | ||||| || ||||| | |||||| ||| | |||||| Sbjct 43006543 CTTAAAACCCAAAAGGTCAGAAGGACCGTGAGGCCCCGCTTTCACGGTCTATATTCA 43006487 >seq3141 Length=78381119 Score = 257 bits (284), Expect = 3e-66 Identities = 215/262 (82%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCT----AAACCCAGCTCACGTTCCCTAT 91 ||| |||||||||||||||| ||| || |||| |||| ||||||||||||||||| Sbjct 70965403 AGTGGGGTAAAACTAACCTGAATCACCACAGTCTGTCTAAACTCAGCTCACGTTCCCTAT 70965462 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || ||||||||| |||||||||| ||||||||| || ||||||||||||||| || Sbjct 70965463 GAGCGGGTGAACA-TCCAACGCTTGGTGAATTCTGCCTCACAATGATAGGAAGAGCCTAC 70965521 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||| Sbjct 70965522 ATCGAAGGATCAAAAAGCGACGTGGCTAGGAACGCTTGGCCGCCACAAGCCAGTTATCCC 70965581 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||| ||| |||||| || | ||| | || | |||||||| |||| Sbjct 70965582 TGTGGTAACTTTCCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGC 70965641 Query 272 CACACTTTCATGGTTTGTATTC 293 | | | |||||||| ||||||| Sbjct 70965642 CCCGCCTTCATGGTCTGTATTC 70965663 >seq3117 Length=28734338 Score = 89.7 bits (98), Expect = 9e-16 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||| ||||||||| | || | |||||||| |||| |||||||||| ||||||||||| | Sbjct 4777779 GAATGATCAAAAATCGACATTGCTATGAATACTTGTCTGCCACAAGACAGTTATCCCTAT 4777720 Query 215 GGTAACTTTTCTGGCACCT 233 ||||||||||||| |||| Sbjct 4777719 GGTAACTTTTCTGATACCT 4777701 >seq3076 Length=9659204 Score = 89.7 bits (98), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC-- 148 ||||||||||||||| || | |||| || | ||||||| ||| ||||||||||| Sbjct 7532653 TTAGTGGGTGAACAAACCCAGGCTTTGAGACTATTGCTTCGCAATGCTAGGAAGAGCCAA 7532712 Query 149 GACATCGAAGGAT-CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||| |||||| ||| | || || ||| ||||| |||||| | || |||| || | Sbjct 7532713 CACATCTAAGGATCCAAGCACCAGCG-GGCTGTGAACACTTGGCGGTCAAGAGCCGGTGA 7532771 Query 208 TCCCTGTGGTAACTTTTCTG 227 |||||| ||| |||||||| Sbjct 7532772 TCCCTGCAGTAGCTTTTCTG 7532791 Score = 86.0 bits (94), Expect = 1e-14 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC-- 148 ||||||||||||||| || | |||| || | ||||||| ||| ||||||||||| Sbjct 7627125 TTAGTGGGTGAACAAACCCAGGCTTTGAGACTATTGCTTCGCAATGCTAGGAAGAGCCAG 7627066 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||| ||||||| || || | ||| ||||| |||||| | || ||| || || Sbjct 7627065 CACATCTAAGGATCCAAGCGCCAGCGAGCTGTGAACACTTGGCGGTCAAGAGCAGGTGAT 7627006 Query 209 CCCTGTGGTAACTTTTCTG 227 ||||| ||| |||||||| Sbjct 7627005 CCCTGCAGTAGCTTTTCTG 7626987 Score = 78.8 bits (86), Expect = 2e-12 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||| |||| |||| || | ||||| | ||| ||||||||||| | Sbjct 7606200 TTAGTGGGTGAACAAGCCAAGGCTTTGAGACTATTGCTTTGCAATGCTAGGAAGAGCCAA 7606141 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 |||| ||||||| || ||| | ||| ||||| |||||| Sbjct 7606140 CATCTAAGGATCCAAGAGCCAGCAGGCTGTGAACCCTTGGC 7606100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854373137664