Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2606 197 3e-48 seq2216 197 3e-48 seq55 197 3e-48 seq3110 147 4e-33 seq3136 134 3e-29 seq3002 75.2 2e-11 >seq2606 Length=117996 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2586 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2529 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 2528 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2469 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2468 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2409 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 2408 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 2349 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2348 AAGTCCCTGCCCTTTGTA 2331 >seq2216 Length=34530 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 10335 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 10278 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 10277 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 10218 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 10217 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 10158 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 10157 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 10098 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 10097 AAGTCCCTGCCCTTTGTA 10080 >seq55 Length=3419 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2502 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2445 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 2444 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2385 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2384 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2325 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 2324 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 2265 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2264 AAGTCCCTGCCCTTTGTA 2247 >seq3110 Length=25029222 Score = 147 bits (162), Expect = 4e-33 Identities = 190/258 (74%), Gaps = 21/258 (8%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | || | ||||| |||||||||||||||| Sbjct 7158998 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACTCGA-GATTGAG-CAATAACAGGTCTGTG 7158941 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || | | | Sbjct 7158940 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTG-GCTA-----TGC---- 7158891 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || | ||||| | | || | | ||||| ||||||| | | |||| Sbjct 7158890 ---TGGCAGG-----CACGGTAACCCACTGAACCCCATTCGTGATGGGGATTGGGAATTG 7158839 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | || ||||||| || |||||| ||| ||||| ||| | | ||||| Sbjct 7158838 CAATTATTCCCCATGAAGGAGGAATTCCCAGTAAGTGCGAGTCATGAGCTTGTGCTGATT 7158779 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||| |||||||||||| Sbjct 7158778 AAGTCTCTGCCCTTTGTA 7158761 >seq3136 Length=61004451 Score = 134 bits (148), Expect = 3e-29 Identities = 190/263 (72%), Gaps = 12/263 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||| |||||||| | ||| | |||| | ||| |||| |||||||||||||||| Sbjct 43009448 CTTCTGAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGACTGAG-CAATAACAGGTCTGTG 43009505 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||| |||||||||||| | || || || | | Sbjct 43009506 ATGCCCTTAGATGTCCGGGGCTGCACGTGCGCTACACTGATTGGCTCAGCGTGTGCTTAC 43009565 Query 191 CCTTGGCCGGAAGGTC-----TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 ||| ||||| ||| | |||||| | | || | | ||||| ||||||| | Sbjct 43009566 CCTATGCCGGCAGGGCAGGCACGGGTAACCGGTTGAACCCCATTCGTGATGGGGATCAGG 43009625 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||||| | | || ||||||| || |||||| || |||| ||| ||| Sbjct 43009626 GATTGCAATTATTCCCCAAGAATGAGGAATTCCCAGTAAGTTCGGATCATAAGCTTGCG- 43009684 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 43009685 ---TTAAGTCCCTGCCCTTTGTA 43009704 >seq3002 Length=2574654 Score = 75.2 bits (82), Expect = 2e-11 Identities = 100/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG-TGCTGGGGATAGAGCATTGCAATT 255 |||| ||| ||||||| | ||| ||| | || || ||||||| | |||| |||| Sbjct 487481 CCGGCAGGCATGGGTAACCC-GTTGAACCCCATCCATGATGGGGATCCGGGATTGAAATT 487539 Query 256 ATTGCTCTTC-AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 ||| ||| | ||| |||||| || |||||| || ||||| ||| || ||||||| || Sbjct 487540 ATT-CTCCACGAACAAGGAATTCCCAGTAAGTGCAGGTCATAAGCTTGCATTGATTAAGT 487598 Query 315 CCCTGCCCTTTGTA 328 ||||||||| |||| Sbjct 487599 CCCTGCCCTCTGTA 487612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947170220032