Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2216 389 1e-105 seq2606 387 4e-105 seq3132 271 2e-70 seq3136 269 8e-70 seq3110 239 1e-60 seq3002 235 2e-59 seq3066 77.0 1e-11 >seq2216 Length=34530 Score = 389 bits (430), Expect = 1e-105 Identities = 422/555 (76%), Gaps = 56/555 (10%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 11206 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 11265 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11266 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 11325 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 11326 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 11385 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 11386 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 11445 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 || | |||||| | | ||||| || ||||||| || ||| Sbjct 11446 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 11505 Query 286 ----------CCGA-AGGGCGTT-----GGTT--TTTTATCTAATAAATACA------CC 321 |||| |||| | | |||| ||| |||| |||||| || || Sbjct 11506 CCGGCCGGGGCCGAGAGGGAGCTGACCGGGTTGGTTTGATCTGATAAATGCACGCATCCC 11565 Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 || ||||| ||||| | |||||||||||||||||||||||||| |||| Sbjct 11566 CCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 11623 Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 |||| |||| | || | | | |||| ||| ||||||||||||||||||||||||| Sbjct 11624 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 11683 Query 430 AGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 |||||||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 11684 AGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 11743 Query 490 TATGACTACTGGCAG 504 |||| |||||||||| Sbjct 11744 TATG-CTACTGGCAG 11757 >seq2606 Length=117996 Score = 387 bits (428), Expect = 4e-105 Identities = 421/556 (76%), Gaps = 57/556 (10%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 3460 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 3519 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3520 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 3579 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 3580 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 3639 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 3640 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 3699 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 || | |||||| | | ||||| || ||||||| || ||| Sbjct 3700 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 3759 Query 286 ----------CCGA-AGGGCGTTG--------GTTTTTTATCTAATAAATACA------C 320 |||| |||| | || | |||| |||| |||||| || | Sbjct 3760 CCGGCCGGGGCCGAGAGGGAGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCC 3819 Query 321 CCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373 ||| ||||| ||||| | |||||||||||||||||||||||||| ||| Sbjct 3820 CCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTT 3877 Query 374 ATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 ||||| |||| | || | | | |||| ||| |||||||||||||||||||||||| Sbjct 3878 ATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCG 3937 Query 429 CAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||||||||||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 3938 CAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 3997 Query 489 ATATGACTACTGGCAG 504 ||||| |||||||||| Sbjct 3998 ATATG-CTACTGGCAG 4012 >seq3132 Length=50790421 Score = 271 bits (300), Expect = 2e-70 Identities = 403/564 (71%), Gaps = 72/564 (13%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| ||||||| ||||| | ||||||||||| Sbjct 14207137 ACTCATTCCAATTACAGGGCCTGGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 14207196 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 14207197 CCCAGGTCGGGAGTGGGTTATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTT 14207256 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||| ||||||| ||||||||| ||||| | |||||||||| Sbjct 14207257 CTCAGGCTCCCTCTCCGGAATTGAACCCTGATTCCCCGTCTCCCGTGGTCACCATGGTAG 14207316 Query 182 GCCACTAT-CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG---AACCATCGCCG 237 | ||| | | |||||||||| |||||||||| || |||| ||| |||| Sbjct 14207317 G-CACGGTGACAACCATCGAAA----ATAGGGCAGATGTTCAAATGGGTCTTCATGGCCG 14207371 Query 238 GCTC--------AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCA-------AG 280 | | ||| |||||| | | ||||| || |||||| || Sbjct 14207372 CCACGGGAGGGGGGGGCGGTGCGATCACCCCAAGGTTATCTAGAGTCACCAAAGCCACAG 14207431 Query 281 GAGCCC--------------CGAAGG---------GCGTTGGTTTTTTATCTAATAAAT- 316 | ||| |||| | | ||||| |||| |||| |||||| Sbjct 14207432 GCACCCGCCTCGGGCCGGGGCGAAAGAGAAAGCCCGGGTTGG-TTTTGATCTGATAAATG 14207490 Query 317 -----ACACCCCTTCCGAAG----TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACC 367 | ||||| | ||||| || | || ||||||||||||||| ||||||| Sbjct 14207491 CAAGCATACCCCCTGCGAAGGGGCTCAGCCCCATTGACATGTATTAGCTCTATAATTACC 14207550 Query 368 ACGGTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGC 422 || |||||||| |||| | || | | | |||| || |||||||||||||||||| Sbjct 14207551 ACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGCACCATAACTGATTTAATGAGC 14207610 Query 423 CATTCGCAGTTTCACTGT-ATAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||| |||||| ||||| ||| ||| || ||| || |||||||||||||||| Sbjct 14207611 CATTCACAGTTTGACTGTCCTAGCCATGCGTA---CTAGGCACACATGGCTTAATCTTTG 14207667 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||||| Sbjct 14207668 AGACAAGCATAT-TCTACTGGCAG 14207690 >seq3136 Length=61004451 Score = 269 bits (298), Expect = 8e-70 Identities = 397/553 (72%), Gaps = 58/553 (10%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||| | ||||||| ||||| ||||||||||||| Sbjct 43008595 ACTCATTCCAATTACAGGGCCTCGAAAGGGTCCTGTATTGCTATTTTTTGTCACTACCTC 43008536 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | || ||| ||||||||||| || ||||||||||| |||||||||| ||||| ||| Sbjct 43008535 CCTGGATCAGGAGTGGGTAATTTGTGCACCTGCTGCCTTTCTTGGATGTGTTAGCCATTT 43008476 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||| ||||||||||||| |||||| || ||| || | || ||||||| Sbjct 43008475 CTCAGGCTCCCTCTCTGGAATCGAACCCTGATTCCCTGTCACCAGTGGTCACTATGGTAG 43008416 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC----- 236 || ||||||| |||||||||||||||||| || ||||| | ||||| Sbjct 43008415 GCATGGCAACTACCATTGAAAGTTGATAGGGCAGATGTTCGAATGGGTCGTCGCCACCAT 43008356 Query 237 -GGCTCAAGGCCATGCGA--TTCGTTAAGTTAT-TATG------AATCACCAAGGAGCCC 286 || | || | || || | | | | ||| || | | || | || ||| Sbjct 43008355 GGGGTGGGGGGCTTGTGATCTGCCGGAGGCTATCTAGGGTGCCCACTCTGCCCGGGGCCA 43008296 Query 287 CGAAGGGCGTTG--------GTTTTTTATCTAATAAATACA-----CCCCTTC------- 326 | |||| | || | |||| || | |||||| || ||||| | Sbjct 43008295 AG-AGGGAGCTGACCAGGCTGGTTTTGATATGATAAATGCATGCATCCCCTCCCCACCCC 43008237 Query 327 --CGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 ||||| |||| | || |||||||||||||||||||||||| ||| ||| Sbjct 43008236 CGCGAAG--AGGGTCAGCACCGGTCAGTATGTATTAGCTCTAGAATTACCACAGTTGTCC 43008179 Query 378 ATGTAGTA-AGGTAC----TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGT 432 | | || | ||| | |||||| ||| |||| ||||||||||||||||||||||| Sbjct 43008178 AAGCAGGAGAGGAGCGAGTGATCAAAGGAACCATAATTGATTTAATGAGCCATTCGCAGT 43008119 Query 433 TTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 ||||||||| || ||| |||||| | | ||||||||| ||||||||||||||||| Sbjct 43008118 TTCACTGTACCAGCCATGC--GTACTTACATAAGCATGGCTTGATCTTTGAGACAAGCAT 43008061 Query 491 ATGACTACTGGCA 503 ||| ||||||||| Sbjct 43008060 ATG-CTACTGGCA 43008049 >seq3110 Length=25029222 Score = 239 bits (264), Expect = 1e-60 Identities = 196/236 (83%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||| ||||| | || |||||| |||| || ||||| | ||||||||||| Sbjct 7159860 ACTCATTCCAGTTACAGGGCCTTGAAAGAGTCCTGCATTGTTATTTTTCGTCACTACCTC 7159919 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | ||||||| |||||||||||||||||||||||||| |||||| |||||||| |||| Sbjct 7159920 CCTGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTTCTTGGAGGTGGTAGC-GTTT 7159978 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||| ||||||||||| ||||| ||| |||||| | ||||||||| Sbjct 7159979 CTCAGGCTCCCTCTCCGAAATCGAACCCTGATTCCGCGTCACCCGTGGTCGCCATGGTAG 7160038 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 || | ||||||||||||| ||||||||||||| || |||| |||||||| Sbjct 7160039 GCACAGAGACTACCATCGAAAGGTGATAGGGCAGAAGTTCTAATGTGTCATCGCCG 7160094 >seq3002 Length=2574654 Score = 235 bits (260), Expect = 2e-59 Identities = 392/570 (69%), Gaps = 86/570 (15%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCC-----AAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||| | | || ||||||| ||||||| ||||| | |||||||| Sbjct 486535 TCATTCCAATTATAGGGCCTCGTTTAAAAGAGTCCTGTATTGCTATTTTTCCTCACTACC 486476 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| | ||| ||| ||||||||||||||||||||||| |||||||| |||||||||| | Sbjct 486475 TCCCTGGGTCAGGAGTGGGTAATTTGCGCGCCTGCTGCTTTCCTTGGTTGTGGTAGCCAT 486416 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||| | ||| ||||||| ||||| | | |||||| | |||||| | Sbjct 486415 TTCTCAGGCTCCCTCTCAGAAATTGAACCCTGATTCCTCATCACCCGTGGTCACCATGAT 486356 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| |||||||| ||||||||||||||||| || ||||| ||| ||| || Sbjct 486355 AGGCACGGCGACTACCATCTAAAGTTGATAGGGCAGACGTTCGAATGGGTCATTGCCAGC 486296 Query 240 TC-AAGGCCATGCGA--TTCGTTAAGTTATTATGAATCACCAAG-----------GAGCC 285 | || ||||||| | | | ||||| || |||||||| | || Sbjct 486295 ACGGGGGGCATGCGATCTGCCCGAGGTTATCCAGAGTCACCAAGCCACTGGCACCCACCC 486236 Query 286 CC----------GA-AGGG-------CGT-TGGTTTTTTATCTAATAAATACAC------ 320 || || |||| ||| | | |||| ||||||||||| ||| Sbjct 486235 CCTGGCTGGGCTGAGAGGGAACTGACCGTGTTGGTTTTGATCTAATAAATGCACGCATCA 486176 Query 321 -----------------CCCTTCCGAAGTCGGGGTT--------TTTAGCATGTATTAGC 355 ||| || || |||| | || |||||||||||| Sbjct 486175 CTCCACCCACCCACCCACCCACCCCCAGAAGGGGGTCAGCGCCCTTCGGCATGTATTAGC 486116 Query 356 TCTAGAATTACCACGGTTATCCATGT--AGTAAGGTACTATCAAATAAACGATAACTGAT 413 |||||||||||||| |||||||| || || | | | | |||| ||| ||||| ||| Sbjct 486115 TCTAGAATTACCACAGTTATCCAAGTAGAGGAGAGAGCGACCAAAGGAACCATAACCGAT 486056 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473 |||||||||||||| ||||||||||| | | || || |||| |||||| Sbjct 486055 TTAATGAGCCATTCACAGTTTCACTGGACCG---GC--------AG---TGCACGGCTTA 486010 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||| ||| ||||| Sbjct 486009 ATCTTTGAGACAAGCATATG-CTATTGGCA 485981 >seq3066 Length=8086621 Score = 77.0 bits (84), Expect = 1e-11 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| |||| || |||| || || || ||| |||| ||| ||||| |||||||| Sbjct 2195536 TATTTTTTGTTACCACCTATCCAGATCAAGAGTGGATAATCTGCATGCCTGATGCCTTCC 2195477 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAAT 142 |||||||||| |||| ||| | |||||| || || ||||| Sbjct 2195476 TTGGATGTGGGAGCCATTTTTTAGGCTCTCTGTCTGGAAT 2195437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510352513024